Sequence
atgc intronic sequence ATGC exonic sequence...tactttttgatattgttcttgaaaaaccttttgctctgtttaattatgtgtagaagtttcttggttgatcctatgactgaatcgtctctttattctacagCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G29180.1 (Glycine max), 3'ss of exon 11
tactttttgatattgttcttgaaaaaccttttgctctgtttaattatgtg-tagaagtt--tcttggttgatcctatgactgaatcgtctctttattct---acagCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTG
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------tataaattatctgagcaatatgtttgatgttgtagtactgcctccttgcaatcaatttcacactatgccatgacacaattattatttttttcttgaacagCAAATATGCCAGTCACTTCACACTTTGTGGTCAGCTCCATTTCGAATTGTTGTTGCTATGGTTCTTCTTTACCAACAACTTGGTGTTGCTTCCCTTCTTG
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G09900.1 (Glycine max), 3'ss of exon 11
tactttttgatattgttcttgaaaaaccttttgctctgtt-taattatgtgtagaagtt--tcttggttgatcctatgactgaatcgtctctttattct--------acagCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTG
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-----------attgttttcgcaatatgtttgatgttgtaatactgcttccttgcaatcaatttcacacgatgccatgccacaattatattttttttcatctcttgaacagCAAATATGCCAGTCACTTCACACTCTCTGGTCAGCTCCAGTACGAATTGTTGTTGCTATGGTTCTTCTTTACCAACAACTTGGTGTTGCTTCCCTTCTTG
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G34660.1 (Arabidopsis thaliana), 3'ss of exon 11
tactttttgatattgttcttgaaaaaccttttgctctgtttaattatgtgtagaagtttcttggttgatcctatgactgaatcgtctctttattcta-cagCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTG
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tgtcttgtt-taatgttttcgtcttaactgtgtctggtatcaatattgttatctaatcaaccagatgtactttgtactaatttttccattttctgtggcagCAAATATGCCAATCACTTCATACCATGTGGTCGGCTCCATTTCGTATAATTATAGCACTGATTCTCCTCTATCAGCAATTGGGTGTTGCCTCGCTCATTG
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G30400.2 (Arabidopsis thaliana), 3'ss of exon 11
tactttttgatattgttcttgaaaaaccttttgctctgtttaattatgtgtagaagtttcttggttgatcctatgactgaatcgtctctt-tattctacagCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTG
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-acctttgaacagtgcttttatctaagctcttgcttgaaatcaaagtgtttatctagctgatagctgttctttttcctaacgtttctcttgtgtgtgacagCAAATCTGCCAATCACTTCATACCATGTGGTCGGCGCCATTTCGTATAATTGTAGCACTGGTTCTCCTCTATCAACAATTGGGTGTTGCCTCGATCATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgtagaagtttcttggttgatcctatgactgaatcgtctctttattctacagCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTG
ggttgat putative branch site (score: 5)
tcgtctctttattct putative PPT
tttattcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tactttttgatattgttcttgaaaaaccttttgctctgtttaattatgtgtagaagtttcttggttgatcctatgactgaatcgtctctttattctacagCAAATATGCCAATCACTTCACACTTTGTGGTCAGCTCCATTCCGTATCATCATTGCAATGGTTCTTCTTTACCAGCAGTTGGGTGTTGCTTCACTTCTTG
- - - - - - - - - -tgaaaaa
- - - - - - - - - - - - - -cttttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactga