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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcttgatttggttcgtgatcaaaatggaaataatccaggccccatttaatctttggaatatgcagCTTGGAGTGAAGTCACACAACATCTTGCACAGTGCAATACACTACGACAAGGATAATGCACAG

Basic information

species Vitis vinifera
transcript Vv10s0003g02730.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110364067|gb|EC927709.1|EC927709
EST:     CATGGACATAAACAAAAATGGAATAGAGCCTGATTTTCGAGAATTTCCAG                         CTTGGAGTGAAGTCACACAACATCTTGCACAGTGCAATACACTACGACAAG
genomic: CATGGACATAAACAAAAATGGAATAGAGCCTGATTTTCGAGAATTTCCAGgtaagattct ... gaatatgcagCTTGGAGTGAAGTCACACAACATCTTGCACAGTGCAATACACTACGACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgtgatcaaaatggaaataatccaggccccatttaatctttggaatatgcagCTTGGAGTGAAGTCACACAACATCTTGCACAGTGCAATACACTACGACAAGGATAATGCACAG
                                 atttaat  putative branch site (score: 4)
          aaaatggaaataat  TA-rich tract