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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gataatttttatgccattgctttgttcagtaacatccatgtttgattattgcaattgcaaagctgaatctttctttcttcttttggggtggttggagcagGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGATCATTCTGATCTAAGCACCTCCAGCCGTTCATCTCGTCCAAACCGGTAGT

Basic information

species Vitis vinifera
transcript Vv10s0003g02060.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856479|gb|DT005534.1|DT005534
EST:     CTAGGCTGGACCGCATTTATAACCATCTTGGTCAAAAGAGGCGTTGGAAG                         GTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGAT
genomic: CTAGGCTGGACCGCATTTATAACCATCTTGGTCAAAAGAGGCGTTGGAAGgtcactctct ... gttggagcagGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGAT
EST: gi|33407619|gb|CF213246.1|CF213246
EST:     CTAGGCTGGACCGCATTTATAACCATCTTGGTCATAAGAGGCGTTGGAAG                         GTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGAT
genomic: CTAGGCTGGACCGCATTTATAACCATCTTGGTCAAAAGAGGCGTTGGAAGgtcactctct ... gttggagcagGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGAT
EST: gi|110415910|gb|EC981850.1|EC981850
EST:     CTAGGCTGGACCGCATTTATAACCATCTTGGTCATAAGAGGCGTTGGAAG                         GTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGAT
genomic: CTAGGCTGGACCGCATTTATAACCATCTTGGTCAAAAGAGGCGTTGGAAGgtcactctct ... gttggagcagGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGAT
EST: gi|30255141|gb|CB971588.1|CB971588
EST:     CTAGGCTGGACCGCATTTATAACCATCTTGGTCTAAAGAGGCGTTGGAAG                         GTTAGGCCATTGAAATGTTTTCAGACCCTGGAAGCAATGTGGAAGAAAGAT
genomic: CTAGGCTGGACCGCATTTATAACCATCTTGGTCAAAAGAGGCGTTGGAAGgtcactctct ... gttggagcagGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgcaattgcaaagctgaatctttctttcttcttttggggtggttggagcagGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGATCATTCTGATCTAAGCACCTCCAGCCGTTCATCTCGTCCAAACCGGTAGT
                    aatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gataatttttatgccattgctttgttcagtaacatccatgtttgattattgcaattgcaaagctgaatctttctttcttcttttggggtggttggagcagGTTAGGCCATTGAAATGTTTTCAGAACCTGGAAGCAATGTGGAAGAAAGATCATTCTGATCTAAGCACCTCCAGCCGTTCATCTCGTCCAAACCGGTAGT

- - - - -tatgcca
- - - - - - - - -tgctttg
- - - - - - - - - - - - - - - -acatcca
- - - - - - - - - - - - - - - - - - - - - - - - - -caattgc