Sequence
atgc intronic sequence ATGC exonic sequence...tttcaaacgtcttcactgatattatattttctcctgacacttttgaacaaatgaaagtcaatttctgtttgttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G00250.1 (Glycine max), 3'ss of exon 12
--tttcaaacgtcttcactgatattatattttctcctgacac---ttttgaacaaatgaaagt--caatttctgtttgttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
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caaattatatcttctcact--tattgcatttaacatttatatggggtttccttgagtggaaatagcaatttcc-----ttgtaataaagcttttgatctctatccagCTTGGTGAAACCATTTGCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCACTCATTGCTGTATTCTAATGGTGTCTGGCAACCGTT
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 14
tttcaaacgtcttcactgatattatattttctcctgac-acttttgaacaaatgaaagtcaatttc----tgtttg-----ttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
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----------aaacattaatattgtttccttactttactgctttcaaatatttatctgttaggttccttatgtttgataatttcttataaaattcttgatctttctccagCTTGGTGAAACCATTTCCCCAATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGTACTAGCTGTTGTATTTTAATGGTGTCTGGCAACCGTT
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 12
tttcaaacgtcttcactgatattatatttt-ctcctgacacttttgaacaaatgaaagtcaatttctgtttg-----ttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
|||| || | || | || ||| || || || | || | | | | || || |||||| ||||||| || | | || |||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| |||||||||||| |||||| | | ||||| ||||| |||||||
----aaacatcactattgtttccttactttactgctttcaatatttatctgtt--aggttcccttatgtttgataatttcttataaaattctggatctttctccagCTTGGTGAAACCATTTGCCCGATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGTACTAGCTGTTGTATTTTAATGGTGTCTGGCAACCGTT
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 3'ss of exon 12
--------------------------------tttcaaacgtc--ttcactgatattat-attttctcctgacacttttgaacaaatgaaagtcaatttctgtttgttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
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gtaacttctttacctttaagttttccctttattcgttaactttgtttcactgatactcttacctaatcttcatgcctttgttgaa--gaaagtga--tattatcaaccccctaacttttgattgttactctgtagCTGGGTGAGATCATCCTCCCAATGAAGGAAGATTTCATCATGGTTCATTTGCAACATTGTTGTAAGCATTGTTGTACTCTCATGGTATCTGGAAATCGTT
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G55970.1 (Arabidopsis thaliana), 3'ss of exon 11
tttcaaacgtcttcactgatattatattttctcctgacacttttgaacaaatgaaagtcaatttctgtttgttcttatgaagctat-ctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
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-----------------------gtaacttcttatttctccattccactattatgatcttgcttccaccagcttttatttatttgttctgtttttctgtagCTCGGTGAGACCATTTGTCCGATGAAGGAAGATTTTATAATGGTTCATTTGCAACATTGCTGCAAGCATTGTACCACTCTCATGGTATCTGGAAACCGGT
upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 3'ss of exon 12
tttcaaacgtcttcactgatattatattttctcctgacacttttgaacaaatgaaa-----gtcaatttctgtttgttcttatg---------aagctat--ctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
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--gtagtcatttctttctatgcactagtcctttcctgcatatcagcttaagtaattcgtttttttttttttttttgcctttgtgttcgtgttaatattatttctgtttgtgtttagCTTGGTGAGACCATTCATCCAATGAAGGAGGATTTTATCATGGTTCACTTGCAGCATAGTTGCACACATTGCTGTACGCTGATGGTAACTGGAAATCGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34549540|gb|CF517772.1|CF517772EST: AATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAA CTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTG
genomic: AATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataa ... tcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaaatgaaagtcaatttctgtttgttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
ctatctattcttctcc CT-rich tract
tatctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcaaacgtcttcactgatattatattttctcctgacacttttgaacaaatgaaagtcaatttctgtttgttcttatgaagctatctattcttctccagCTTGGTGAAACCATAAGCCCAATGAAGGAAGATTTTATAATGGTTCACTTGCAACATGCATGTACTCATTGTTGTCATCTGATGGTATCTGGAAACCGTT
- - - - -tcttcac
- - - - - - - - - - - - - - - - cctgaca
- - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct