Sequence
atgc intronic sequence ATGC exonic sequencegtattttttctgcaatggataatgtctgttcagacagtatatcacttctttggggtgctaatatggcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G10870.1 (Glycine max), 3'ss of exon 8
------------------------gtattttttctgcaatggataatgtctgttcagacagtatatcacttctttggggtgctaatatggcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
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gagaaatgacaataataggagacaaaaaatgtaattaagcatttagtttttctacaaagagaat----tttgtcaaacatgccactaacatattggtattttagAGTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAATGGGGATGCTTTCAAGAAGCATCTTGCACGGATTCCAGATTATTTTTGGGTTTCAGAAGATG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G07110.1 (Glycine max), 3'ss of exon 8
-----------------------------------------------gtattttttctgcaatggataatgtctgttcagacagtatat-cacttctttggggtgctaatatggcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
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gtagtcatcataatattaaaatatatattactttctagcatgcaccaatttgaatgataaattttttagtttttctctataaaggaaattcattcaaatacaacattatcatg-ttcgcattttctagGTTCTATGTATGCTTGCTTGTTGGGTAGAAGATCCAAATGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 7
-------------------------------------------gtattttttctgcaatggataatgtctgttcagacagtatat-cacttctttggggtgctaatatggcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
|| | | | | || | || || | | || | || || | | | |||| ||| || || |||| || ||||||||| | |||||||| ||||||||| |||| ||| |||||||||||| ||||| ||||| |||||||| |||||||| |||||||
gtaggtgtcacaacaataatgcatattgattttttttatccttgtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G24160.2 (Glycine max), 3'ss of exon 1
gtattttttctgcaatggataatgtctgttcagacagtatat-cacttctttggggtgctaatatggcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
|| | | | | || | || || | | || | || || | | | |||| ||| || || |||| || ||||||||| | |||||||| ||||||||| |||| ||| |||||||||||| ||||| ||||| |||||||| |||||||| |||||||
gtgagtaaattaaactttttattttccttttaaagaggaaattcattcaaatatgacactaacatgcatttttttc--tagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGATCCCAGATTACTTATGGGTTTCTGAAGATG
upper sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 7
----------------------------gtattttttctgca-atggataatgt---------------ctgttcagacagtatatcacttctttggggtgctaatatg---gcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
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gtaggtgtcataacaataatgcatattgattttttttatccttatgagtaaaataaactttttattttccttttcaagagggaattcattcaaatatgatactaaaatgcatatattttttttccagGTTTTATGTATGCTTGCTTGTTGGGTGGAAGATCCAAACGGAGATGCTTTCAAGAAGCATCTTGCAAGGGTCCCAGATTACTTATGGGTTTCTGAAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgttcagacagtatatcacttctttggggtgctaatatggcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
tgctaat putative branch site (score: 2)
ttaaattgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattttttctgcaatggataatgtctgttcagacagtatatcacttctttggggtgctaatatggcttaaattgaacagGTATTGTGTATGCTTTCATGTTGGGTTGAAGATCCAGACGGGGATTATTTCAAGAAGCACCTTGCTAGGATTCCAGATTATATATGGGTTGGAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG