Sequence
atgc intronic sequence ATGC exonic sequencegtaagtggacactactttgatctcttcatcgtgtttacattctctaactcactgcttttttatgttaatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 3'ss of exon 11
--------gtaagtggacactactttgatctcttcatcgtgtttacattctctaactcactgcttttttatgttaatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
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gtattttattacttagacacgcaaaatacttactttctgtgcttataacatata---taatggtcttgtgtaatgga----ttgcagGTTGACATAGCAATCCCAGAGGTTTTTGTTGGTGGTTTACTTGGTTCAATGCTTATATTCCTGTTTAGTGCATGGGCTTGTTCTGCTGTTGGCAGAACTG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G075900_T01 (Zea mays), 3'ss of exon 11
gtaagtggacactactttgatctcttcatcgtgt-ttacattctctaactcactgcttttttatgttaatcacc--ttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
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gtatgcagtacgtgttgctatgcccatgtggaatactgaacttttgtgctca-tattcagtgatcgtacacaattgttgcagGTTGACATAGCAGTCCCGGAGATTTTTGTTGGTGGTTTATTAGGCTCGATGCTTATATTCCTGTTTAGTGCATGGGCTTGTTCAGCAGTTGGCAAAACTG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G069410_T01 (Zea mays), 3'ss of exon 3
gta---agtggacactactttgatctctt---catcgtgtttacattctctaactcactgcttttttatgttaatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
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gtatgcagtatgtgttactatgccatgtggaatactgaacttttgtgctcatattcaggggtcttacacaa-----atgttgcagGTTGATATAGCAGTCCCAGAGATTTTTGTTGGTGGTTTATTAGGCTCGATGCTTATATTCCTGTTCAGTGCATGGGCTTGCTCAGCAGTTGGCAAAACTG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G24120.1 (Glycine max), 3'ss of exon 10
---------gtaagtgga-cactactttgatc----tcttcatcgtgttt-----acattctctaactcactgcttttttatgtta--atcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
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ggactaaacatatttaagtcaccactctaaccagtactattattgtgtctcatcagatttcactggttcttctaagttgcaacttatgattgaattgcagGTTGATATTGCAATTCCCGAAGTTTTCGTTGGTGGGTTGCTAGGTTCCATGCTTATATTTGTTTTTAGTGCTTGGGCCTGTTCTGCTGTTGGCAGAACTG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G00350.1 (Glycine max), 3'ss of exon 11
------gtaagtgga-cactactttgatc-tcttcatcgtgtttacattctct---aactcactgcttttt-tatgtt---------aatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
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ctaaacatatttaagtcactcccctaattattattactattattgtgtctcatcagatttcactggttcttctaagttgcaacttatgattgagttgcagGTTGATATTGCTATTCCCGAAGTTTTCGTTGGTGGGCTGCTAGGTTCCATGCTTATATTTGTTTTTAGTGCTTGGGCCTGTGCTGCTGTTGGCAGAACTG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 3'ss of exon 11
gtaagtggacactactttgatctcttcatcgtgtttacattctctaactcactgct--tttttatgttaatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
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----gtagatttcgttatg-catcgttgctgtattctcgatgttgagacaacttctcatactcatcctcggataaaatcagGTTGATATTGCTATCCCAGAAGTGTTCGTTGGTGGATTATTGGGTGCCATGCTTATTTTCCTCTTTAGTGCTTGGGCATGCGCGGCAGTTGGTCGAACTG
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S105_42V6.2 (Physcomitrella patens), 3'ss of exon 12
---------------------------------------------------gtaagtggacactac-----tttgatctcttcatc-gtgtttacattctctaactcactgcttttttatgttaatca----cctta-------------cagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
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gtatgacaaatttatgctcctgcaaccagggttcaatcactgcattagctgggaagcaaaggttttcaagattggatttatgcataagtatgtaggaattgcaac-cggtgggggcctgtggtaatcgaaatcctcattgtttgtgaattcagGTGGATATTGCAATCCCAGAAGTATTTGTAGGAGGCTTGTTGGGGTCTATGCTTATTTATCTGTTCAGTGCCTGGGCATGTGCTGCTGTGGGCCGAACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77580819|gb|DV219323.1|DV219323EST: GTGCTTATATGGATGAGGTGTCAGCATTTGCTCATGAACCTTTTAAGCAG GTTGATATTGCCATTCCAGAAGTTT
genomic: GTGCTTATATGGATGAGGTGTCAGCATTTGCTCATGAACCTTTTAAGCAGgtaagtggac ... caccttacagGTTGATATTGCCATTCCAGAAGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcatcgtgtttacattctctaactcactgcttttttatgttaatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
tcacctt CT-rich tract
ttttttatgttaatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtaagtggacactactttgatctcttcatcgtgtttacattctctaactcactgcttttttatgttaatcaccttacagGTTGATATTGCCATTCCAGAAGTTTTTGTTGGTGGGTTGTTGGGCTCTATGCTTATTTTCCTATTTAGTGCATGGGCATGTTCTGCAGTTGGCCGGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG