Sequence
atgc intronic sequence ATGC exonic sequencegtacatatagtattgaaactctttctggattttttgctgcacttgagtttgcaatcctagtgacactgatttttcttatctagATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 12
--------gtacatatagtattgaaactctttctggattttttgctgcacttgagtttgcaatcctagtgacactgatttttcttatctagATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAG
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gtacacgcatgcacatatatacataattacatatacatatacagatgtgcatta--ttgtatttgttttacttatgaacctgttt-tctagATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAG
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G44420.2 (Glycine max), 3'ss of exon 12
------gtacatatag-tattgaaactctttctggat-tttttgctgca---cttgagtttgcaatcctagtgacactgattttt---cttatctagATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAG
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gtattcatgcatgcaaacacttgaataatgaatagttctttctactttaggttttatgtatacttttttgtaattgtttacttgtgaacttttctagATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCGTTTTCTCACCCAAATAAGCAACTATGTGTCATAACCTGTGGTGATGATAAGACCATTAAG
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G00880.1 (Glycine max), 3'ss of exon 11
gtacatatagtattgaaactctt------tctggattttttgctgcacttgagtttgca---atcctagtgacactgattttt------cttatctagATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAG
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gtatacaca-catgcaaacacttgtataatgaagagttctctctactttaggttttatatatacttttttgtaattgtttacttatgaacttttctagATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCGTTTTCTCACCCAAATAAGCAACTATGTGTCATAACCTGTGGTGATGATAAGACCATTAAG
upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G03180.1 (Glycine max), 3'ss of exon 12
gtacatata-gtattgaaactctttctggattttttgctgcacttgagtttgcaatcctagtgacactgatttttcttatctagATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAG
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gtacacccatgcatacatatacatgatacatatacatatgtgcattattgtatttgtttactta---tgaacctattt-tctagATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCATCCAAATAAGCAACTATGTGTGATAACTTGTGGTGATGATAAAACCATTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttttgctgcacttgagtttgcaatcctagtgacactgatttttcttatctagATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAG
cactgat putative branch site (score: 3)
tttttcttatct CT-rich tract
atttttcttatcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacatatagtattgaaactctttctggattttttgctgcacttgagtttgcaatcctagtgacactgatttttcttatctagATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA