Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttcctgtctcttttacatgtttgcaatgtgaatatcttatccttttactaaataatcaatcacacatatatatagtagttgtaaccatttctatggtaattctgtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGTGCTATTGACATCACTCAGTTATCAGTGGCTG

Basic information

species Vitis vinifera
transcript Vv08s0105g00590.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G162672_T02 (Zea mays), 3'ss of exon 11
gtttttcctgtctcttttacatgtttgcaatgtgaatatcttatccttttactaaata---atcaatcacacatatat--atagtagttgtaaccatttctatggtaattctgtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGTGCTATTGACATCACTCAGTTATCAGTGGCTG
                               || |   |||| |  |||   ||||||   |||| | ||     | |  |||  ||||  |    |||  |   |  ||    ||    |||| || || || || |||||    |||||||| |||||||||||||| || || ||||| |||||||| ||||| || || |
-------------------------------gttatactctttttttttgtgtaaatatttatcattaacgtgcttctcaataacagtttcactttttttaaaaatgttttaaattttgtagTCACTTCCTGTTGCTTTTGGGATGGAAACTGCAAAATGGATTTGTGTTGGAGCAATTGATATCACTCAATTATCTGTTGCAG

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G19390.1 (Glycine max), 3'ss of exon 3
gtttttcctgtc-tcttttacatgtttgcaatgtgaatat---cttatccttttactaaataatc-aatcacacatatatat---agtagttgtaacca---tttctat-ggtaattctgtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGTGCTATTGACATCACTCAGTTATCAGTGGCTG
|| |   || |  || ||| | | |    ||    | | |   || || | | |  || | | || |||||   | |   ||   ||||| |   ||     ||| ||| ||  |   | |||||  |||| || || || || ||||||||||||||||| || ||||| ||||| || ||||||||||| || || ||||| || ||||
gtctactctattgtcctttgcctttcaataacagtactctgaactcattcatgttttagaaattctaatcatgtacagtcattaaagtagcttctactgacttttgtattggctaccttctttgagtagTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATATGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCTG

upper sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G43310.1 (Glycine max), 3'ss of exon 11
-gtttttcctgtc-tcttttacatgtttgcaatgtgaat---atcttatccttttactaaataatc-aatcacacatatatat---agtagttgtaac---catttctat-ggtaattctgtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGTGCTATTGACATCACTCAGTTATCAGTGGCTG
 || |   || |  || ||| | | |    ||    | |   | ||||| | | |  || | | || |||||   | |   ||   ||||| |   ||   | ||||||| ||  |   | |||||  |||| || || || || ||||||||||||||||| || ||||| ||||| || ||||||||||| || || ||||| || ||  
ggtatactctattgtcctttgcctttcaataacagtactctgagcttattcatgttttagaaattctaatcatgtacagtcattgaagtagcttctactgacttttctattggctaccttctttgagtaGTCTCTTCCAGTTGCTTTTGGTGCTGAAACTGCAAAGTGGATCTGTGTTGGCGCTATTGACATTACACAATTATCTGTAGCG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30252103|gb|CB968742.1|CB968742
EST:     TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAG                         TCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
genomic: TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGgtttttcctg ... gtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
EST: gi|161705814|gb|FC057091.1|FC057091
EST:     TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAG                         TCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
genomic: TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGgtttttcctg ... gtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
EST: gi|351034199|gb|FQ463133.1|FQ463133
EST:     TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCGG                         TCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
genomic: TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGgtttttcctg ... gtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
EST: gi|351025946|gb|FQ427958.1|FQ427958
EST:     TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAG                         TCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
genomic: TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGgtttttcctg ... gtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
EST: gi|351031189|gb|FQ445016.1|FQ445016
EST:     TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAA                         TCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGT
genomic: TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGgtttttcctg ... gtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGT
EST: gi|351018561|gb|FQ424668.1|FQ424668
EST:     TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAG                         TCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
genomic: TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGgtttttcctg ... gtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
EST: gi|349829107|gb|FQ419639.1|FQ419639
EST:     TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAG                         TCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT
genomic: TTGTAAATGACTTTAAAAGTGTTGAAGGAGATAGAGCATTGGGACTTCAGgtttttcctg ... gtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcacacatatatatagtagttgtaaccatttctatggtaattctgtttgaacagTCCCTACCGGTGGCATTTGGTGCTGAAACTGCTAAATGGATTTGTGTGGGTGCTATTGACATCACTCAGTTATCAGTGGCTG
                    ttgtaac  putative branch site (score: 2)
                                         ttctgttt  putative PPT
       atatatatagtagtt  TA-rich tract