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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA

Basic information

species Vitis vinifera
transcript Vv08s0058g01360.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os11g02464.1 (Oryza sativa), 3'ss of exon 11
----tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaact-tccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA
       |||| || ||   || | ||      ||    ||| |   |  ||| |     ||        ||   ||         | | | | ||    | ||||| ||||||||||| |||||  | || |||||||| |||||||||||  |||| || ||||||||  |||| ||||||  || ||||   ||  | |  |
gtatgatatgggtaactttgttcaggttaactctgttgataactctgaattggcatctaaattctcgctttttcttttgcattggttgtgcctgtg----tacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGGACAACCAAGGAGATGTTCCCAATCATTCTCACCATATCGAGCTATGAA

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os12g02390.1 (Oryza sativa), 3'ss of exon 11
tgcatgg-atacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttg--cagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA
 | |||  ||  | |  ||  |   |       ||||   |   |    ||| | | ||| | ||  | |  ||  |      ||  || |||   ||  ||||| ||||||||||| |||||  | || |||||||| |||||||||||  |||| || ||||||||  |||| ||||||  || ||||   ||  | |  |
-gtatgatatggcaaactttgttcaggttaactctgttgata--actctgaattggcatctaaattctcgcttttcttttgcattggttgtgcccgtgtacagAGGTACATGGATTCAGAGATCCGCGCCATCATGGCCCAGTACATGCCCCTGGACAACCAAGGAGATGTTCCCAATCATTCTCACCATATCGAGCTATGAA

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G00510.1 (Glycine max), 3'ss of exon 11
--tgcatggatacctag-attaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---
  ||  |   | ||      || | | ||   |      |  | | || ||   || |      ||   | || ||||| | ||     | ||  |  |||||||||| ||||| |||||||| |||||||| ||||| || |||||||| ||||||||||||  ||||||| | | ||| | ||   |||  |   | ||||   
tttgtctttttgccccctgatattatagttattatacaaaggtacaatttgatcattgacatcctaaactcgt-ttaattaaaagagaatatt--ttctgcagAGATATATGGACTCTGAGATAAGGGCAATTATGGCCCAATACATGCCATTGGATAATCAACCAGAGATTTCTAGTCAAGCTC---ATGAAGGTGTCTAGAAGT

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G44580.1 (Glycine max), 3'ss of exon 11
-----------------------------------------------------tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttcctttt--gctgt-tgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA--
                                                       |   |     |   ||    || |  ||  |    |||  ||||       |  || ||  |   ||| || || | ||  |     |    | | |||||||||| |||||||| |||||  | ||||| ||||| ||||||||||||||||||||||||   ||| |  | ||||| ||||  ||     | || ||||  
ggtatgattattgcaagtttgatgttttgttgatataaagttcacaataaagtgactctggctttttttttgtcttgatttgttgccaacatttttatacattctcatcataaaattctctgtttttataaaaaaataaaaataaattatgtgcaGAGATATATGGATTCGGAGATACGTGCAATTATGGCTCAGTACATGCCTTTGGATAATCAACCTGAGGTCTCTAATCAAGTTCATCACA---ATATCTAGAAT

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G41070.1 (Glycine max), 3'ss of exon 11
--------------------------------------------------------------------------------tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA
                                                                                |   |      || ||||  ||| |        | ||  |||  | |    |||  ||   | | ||| | ||  | | | ||   || ||    |||||||||| |||||||| |||||  |  |||| ||||| || |||||||||||||||| ||||   ||  |  | ||||| || |  |               
gtatgattattgcgagtttgatgttttgttaatatagagttcacaatatgtactaaagtgactctggcttttcttctctcttttttctagtcttgatttgtgttgccaacattttta--tgcattctcatcataaaattc-tgttattttttttttaaaagCTAATTTATG----TGCAGAGATATATGGATTCGGAGATACGTACAATTATGGCCCAATACATGCCTTTGGATAGTCAACCTGATGTCTCTAATCAAGTCCATC---------------

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G41070.3 (Glycine max), 3'ss of exon 11
--------------------------------------------------------------------------------tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---
                                                                                |   |      || ||||  ||| |        | ||  |||  | |    |||  ||   | | ||| | ||  | | | ||   || ||    |||||||||| |||||||| |||||  |  |||| ||||| || |||||||||||||||| ||||   ||  |  | ||||| || |  ||     | || ||||   
gtatgattattgcgagtttgatgttttgttaatatagagttcacaatatgtactaaagtgactctggcttttcttctctcttttttctagtcttgatttgtgttgccaacattttta--tgcattctcatcataaaattc-tgttattttttttttaaaagctaatttatg----tgcagAGATATATGGATTCGGAGATACGTACAATTATGGCCCAATACATGCCTTTGGATAGTCAACCTGATGTCTCTAATCAAGTCCATCACA---ATATCTAGATCT

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G52850.1 (Arabidopsis thaliana), 3'ss of exon 11
---tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaa-tgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---
   | |   | |   ||   |  | | ||       |  ||       | |    |  | || | ||     || ||| | |||| |    ||      ||||||| ||||||||| | || ||||| |  |||||||||||||||||||| ||||| | ||||  |   |   ||| |   | || ||||  ||| || |      
gtatacgatgttctttactctggtcttgttatcatattaaaacataggaagattttgcggtctagatagagatgctaagtaacaattgaaatta-----tgcagAGTTACATGGATGCGGAAATTAGAGGGATCATGGCACAGTACATGCCATTGGAAAGTCAACCACCCAACACAAGT---GGTCACCATATGGATATATGAGTGA

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S227_69V6.1 (Physcomitrella patens), 3'ss of exon 13
tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatga---caacttccttttgctgttgcagAG--ATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA-
    || ||  ||  |  ||||  |  |   | | |   | |||  | | ||   | |  |  | |||   |||| |     | |||     |||||| | | ||  ||||||||| || ||||| |||||||| ||||| |||||||||||  | || |    | | ||  ||    | |||  |  ||  ||   | |  ||| 
---ttgcatgtctccacaaatggagatctctcttttg--tactagttcgtaaagtgcttgaacttatttgattaacggatttagcttgtcggtgctgtggaacagTCATACATGGACTCGGAGATAAGGGCAATAATGGCGCAGTACATGCCACTCGACAGCTCAAGTGAAGTTAATCACCAT-CTGACCGAGGAAGCGTAAAGAC

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: EFJ30872 (Selaginella moellendorffii), 3'ss of exon 11
tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---
                     ||  ||       || ||||||  ||  |   |   | ||  |  |     || ||  |||||    |       | ||   ||||||||||| |||||||| || ||||||||||||||||||||  | || |  |||   ||  | |   ||||       || | |||   ||      
---------------------gtaatatcaattcgtgattgcttgatccagcaaaacttaacgttctc----tactggaaacttttcct-------gtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGATGTGC---ATCACCACTTGCAAGAGGATGCTTGATTGT

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: EFJ31111 (Selaginella moellendorffii), 3'ss of exon 10
tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---
                              |   || ||  || |   |  ||    ||| |  | |||   |   |     |  ||  || | | ||||   || |||||||| |||||||| || |||||||| |||||||||||| |||| |  ||    ||  | |   | |     | | | | |||    |||    
------------------------------gtacgtgatctctct---ggcat----tcattccggttggtattgagctgtgtggctgctggt-tggcagTCTTATATGGATTCGGAGATTAGAGCGATCATGGCGCAGTACATGCCTCTGGACAGCCAGAACGAAGTCC---ACCGCCACCTCGAGGAGGAAGCGTAGTGAT

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: EFJ06539 (Selaginella moellendorffii), 3'ss of exon 10
tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---
                              |   || ||  || |   |  ||    ||| |  | |||   |   |     |  ||  || | | ||||   || |||||||| |||||||| || |||||||| |||||||||||| |||| |  ||    ||  | |   | |    || | | | |||    |||    
------------------------------gtacgtgatctctct---ggcat----tcattccggttggtattgagctgtgtggctgctggt-tggcagTCTTATATGGATTCGGAGATTAGAGCGATCATGGCGCAGTACATGCCTCTGGACAGCCAGAACGAAGTCC---ACCGCCATCTCGAGGAGGAAGCGTAGTGAT

upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: EFJ22768 (Selaginella moellendorffii), 3'ss of exon 11
tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA---
                     ||  ||       ||  | |||  ||  |   |   | ||  |  |     || ||  |||||    |       | ||   ||||||||||| |||||||| || ||||||||||||||||||||  | || |  |||   ||  | |   ||||       || | |||   ||      
---------------------gtaatatcaattcgtgctcgcttgatccagcaaaacttaacgttctc----tactggaaacttttcct-------gtagTCTTACATGGATTCGGAGATTAGAGCTATCATGGCACAGTACATGCCGCTCGACAGCCAAAACGACGTGC---ATCACCACTTGCAAGAGGATGCTTGATTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579549|gb|CB002244.1|CB002244
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|32246668|gb|CD712487.1|CD712487
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|37186947|gb|CF606300.1|CF606300
EST:     GCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: GCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|29781753|gb|CB346482.2|CB346482
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATGATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|110709458|gb|EE084946.1|EE084946
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|28959761|gb|CB339881.1|CB339881
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|33405675|gb|CF211302.1|CF211302
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACGGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|22014493|gb|BQ799527.1|BQ799527
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|46910453|gb|CN545828.1|CN545828
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACGTGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|71881336|gb|DT030391.1|DT030391
EST:     GCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: GCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|110702269|gb|EE080793.1|EE080793
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|110390350|gb|EC955254.1|EC955254
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|30255039|gb|CB971486.1|CB971486
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTTTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|110404060|gb|EC970018.1|EC970018
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|110387405|gb|EC952066.1|EC952066
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|71875647|gb|DT024702.1|DT024702
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|110390265|gb|EC955167.1|EC955167
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
EST: gi|110371604|gb|EC935716.1|EC935716
EST:     TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGG                         AGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG
genomic: TGGCAGCAGCTGGAGTTGGAGGATATGCCCTGTACAAGTACAGAATCCGGgtatgctgat ... gctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA
                        tgttaat  putative branch site (score: 3)
                                    cttccttttgctgtt  putative PPT
              aatatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcatggatacctagattaatgtggtacgtgcctgtaattgctatatggaaataggatcaatatgattgtgttaatgacaacttccttttgctgttgcagAGATACATGGATTCTGAGATTAGGGCAATCATGGCACAGTACATGCCTTTGGATAATCAAGGAGAGATTCCAAATCATGTTCCCCATGGGGACATTTAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
-gcatgga
- - - - - - - - - - - - - - -tgcctgt
- - - - - - - - - - - - - - - - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgacaa