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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttattggcatcatttccatttcatttctttttctgttcacaatatgtgatttatttgattatggggtattgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 11
-------------gtagttattggcatcatttccatttcatttctttttctgttcacaatatgtgatttatttgat-------tatggggtattgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG
               | | ||   | |   || || ||  | |   | | | || | || | ||   |  | ||||       ||    || || ||   || ||||  | || ||||||||||| ||||||||||| |||||||| ||||||||||| |||||| || |||| || |||||||| |||||||||||||| ||||
gtaatttttctctcaattcatcaacttttgttgcaattgttatacctatttatttataaaaggtttatggtatgataacttgatactaagtttttttatatgtagGCATTATCTGTTGGAATATTCCCATATGTTCTAAAGCTGTTACAAACAACAACACCAGAACTACGACAGATCCTTGTATTCATATGGACAAAGATTCTTG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 11
-------------gtagttattggcatcatttccatttcatttctttttctgttcacaatatgtgatttatttgattatggggta------ttgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG
               | | ||   | |   || |  ||  |||   | | | || | || | ||   |  | |||| |   | ||      || ||   || ||||  | || ||||||||||||||||||||||| |||||||| ||||||||||| || ||| || | || || |||||||| |||||||||||||| ||||
gtaatttttctctcaattcatcaacttttgttgctattgttttacctatttatttataaaaggtttatggtgtgataacttgatacctatttttttatatgtagGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 11
-----------------gtagttattggcatcatttccatttcatttctttttctgttcacaatatgtg-atttatttgattatggggtattgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG
                  || ||  |  |  | |||   || ||     |||    ||   |  ||||  || | |||     ||  ||     | |||  ||||| |||| ||||||||||| |||||||| ||||||||  |||||||||||||    ||  ||||||| || || || || ||||||||||| || ||||
gtatacttctttaaattttaatttctctctccctttggcttacacagagtttctcctttttatcatgtatatgtctttacacgtgaagtgaacattcttctagGCCTTGTCTGTTGGAATATTCCCATATGTGCTGAAGCTTCTGCAAACAACAACGAATGAGCTAAGACAGATCCTGGTTTTCATATGGACAAAAATTCTTG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S199_73V6.1 (Physcomitrella patens), 3'ss of exon 11
------------gtagtt--attggcatcatttccatttcatttctttttctgttcacaatatgtgattt--atttgattatggggtattgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG
             |  ||  |||||    | ||  |     ||  ||    ||   |  | |  | |||   ||||| |  || | | |||||   | |||||  | || || |||||||||||||| ||||| |||||| ||||||||||| || | || ||  | || |||||||| ||||| ||||| |||||  | |
ctttatgattggatcattctattggagggacttttaagatgttggttccaatgggaattacagatcattctaatttggtgttgtgttcttgtttggt-cagGCTTTATCTGTAGGAATATTTCCATACGTTCTTAAGCTGCTGCAAACAACAGCTACTGATTTGCGGCAGATTCTTGTGTTTATCTGGACGAAGATTTTAG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: PP1S26_271V6.1 (Physcomitrella patens), 3'ss of exon 11
----------------------------------------------------------------------------------------------------gtagttattggca-tcatttccatttcatttctttttctgttcacaatatgtgatttatttg--attatggggtattgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG
                                                                                                     || ||  | ||| || || |     ||   |   |||||||     | | | ||| ||     ||| ||   | |||||  |  |||||  |||| || |||||||| || ||||| || |||||| ||||| ||||  || | || ||  | ||||||||||||||||||||||||||||| || |
gtaactatcatctccttgtcagttcttattcagagctttgcccctgttgtatcgctcggttagtgtgaacctttcagtaagaagatatgtgaaacaatatatatttggtcgcaatccttacttgggcagaacaccttctgtttt--gtgtctcattaatgaagtattgtgtacttttgtttttaccagGCTTTGTCTGTAGGAATATTCCCCTATGTCCTTAAGCTGCTGCAAGCAACGGCTACTGATTTGCGGCAAATTCTTGTATTTATATGGACAAAGATTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttctgttcacaatatgtgatttatttgattatggggtattgttccttgcagGCCCTGTCCGTTGGAATATTTCCATATGTTCTGAAGCTGTTGCAAACAACAACTCCAGAATTAAGACAAATTCTTGTATTTATATGGACAAAGATCCTTG
                          atttgat  putative branch site (score: 5)
                                          ttgttcctt  putative PPT
              aatatgtgatttattt  TA-rich tract