1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttctttcctcactgaattttctttcattttccatttcttgttcactttggccactgagctcatcctaggtaatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCATTGACATGGACGCTGATGTGATCACAATTGAGAACTCCCGATCTGATG
species | Vitis vinifera |
transcript | Vv08s0056g01570.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|32269944|gb|CD719103.1|CD719103
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|294965861|gb|GW837344.1|GW837344
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|110699661|gb|EE076856.1|EE076856
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|32248141|gb|CD713960.1|CD713960
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|110376456|gb|EC941522.1|EC941522
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|33405706|gb|CF211333.1|CF211333
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|29785954|gb|CB343329.2|CB343329
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|30324405|gb|CD007667.1|CD007667
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|110687537|gb|EE065057.1|EE065057
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|37188506|gb|CF607855.1|CF607855
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|110688905|gb|EE067993.1|EE067993
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|110690652|gb|EE068000.1|EE068000
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCEST: gi|33409401|gb|CF215028.1|CF215028
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
EST: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAG ATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
genomic: CTGTCCACTCCTTCAGGATCACCAACTGTGGTGTTCAAGACACTACCCAGgttctttcct ... aatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATC
attttccatttcttgttcactttggccactgagctcatcctaggtaatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCATTGACATGGACGCTGATGTGATCACAATTGAGAACTCCCGATCTGATG
taatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttcctcactgaattttctttcattttccatttcttgttcactttggccactgagctcatcctaggtaatatgacagATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCCATCATTGACATGGACGCTGATGTGATCACAATTGAGAACTCCCGATCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
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