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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaggcattaagtttaattacttgaagatgatattgttattattatttttatttttacaattgaagaagaaacttttaatgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcagAGGGATGTGCCTGCTCGCTATCTTCTTCGACTGGGTCAAGGAGAACAAGAACTTGCGACTGATCTTGACTTTAGCCGTCAAGGACGCGTTAATGCTATGC

Basic information

species Vitis vinifera
transcript Vv08s0056g01110.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g01110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os03g26960.1 (Oryza sativa), 3'ss of exon 12
gtatgaggcattaagtttaattacttgaagatgatat-tgttattattatttttatttttacaattgaagaagaaacttttaatgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcagAGGGATGTGCCTGCTCGCTATCTTCTTCGACTGGGTCAAGGAGAACAAGAACTTGCGACTGATCTTGACTTTAGCCGTCAAGGACGCGTTAATGCTATGC
                      |  | |   ||| || | |  | || |  |  ||  |  | |   |    |      ||  | | | | |  ||  ||     || || |    ||||  |||||  |    ||||| |||||||||||| | || |||||||| || ||||| || ||||||||  | || |||||||| || |||||||||||||| || || ||||||||||
----------------------atctcatattgaaatatatcctaatcacctagatgctctctacatagttgg-----cttgctacatgttctttttaaac----ttgctgat---tttacttgtttctt---ccagAGAGATGTGCCTGCTAGGTACCTTCTTCGTCTTGGTCAGGGTGAACAAGAGTTGGCAACTGATCTCGATTTTAGCCGTCAAGGTCGTGTCAATGCTATGC

upper sequence: Vv08s0056g01110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G410479_T01 (Zea mays), 3'ss of exon 13
gtatgaggcattaagtttaattacttgaagatgatattgttattattatttttatttttacaattgaagaagaaacttttaatgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcagAGGGATGTGCCTGCTCGCTATCTTCTTCGACTGGGTCAAGGAGAACAAGAACTTGCGACTGATCTTGACTTTAGCCGTCAAGGACGCGTTAATGCTATGC
                              ||| | ||  ||| |||        ||||  ||||  |  |  |   | |  ||| | |    ||   |        || |      ||  | |||  | ||  ||||||||||||||||| | || ||||| || || ||||| || || |||||| | || ||||||||||| ||||| |||||||| || || || |||||||
------------------------------atgcttttcgtataattgcagaacatttttaaattttaatacgactatctgttgcatgttagtttgctacatgacgtctga------tacttcttttttctgcaagAGGGATGTGCCTGCTAGGTACCTTCTCCGCCTTGGTCAGGGTGAGCAAGAATTGGCCACTGATCTTGATTTTAGTCGTCAAGGTCGTGTCAACGCTATGC

upper sequence: Vv08s0056g01110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA0048S00340.1 (Glycine max), 3'ss of exon 11
gtatgaggcattaagtttaattacttgaagatgatattgttattattatttttatttttacaattgaagaagaaacttttaatgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcagAGGGATGTGCCTGCTCGCTATCTTCTTCGACTGGGTCAAGGAGAACAAGAACTTGCGACTGATCTTGACTTTAGCCGTCAAGGACGCGTTAATGCTATGC
                               |||   |  ||    |   |||| |   ||||||     | ||| | ||  |   | | |||    |    |     |    |||||  ||  ||  | | | |||| ||||| ||||| || |||||||||||||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| || |||||||| ||||
-------------------------------tgagggttctaactctgagtttagta--acaatttgttgataaattcttgctttctatacag---aagcttatcatttgtttcattttaatcctttttgttttagAGAGATGTTCCTGCACGTTATCTTCTTCGACTTGGTCAAGGAGAACAAGAGCTAGCAACTGATCTTGATTTTAGCCGGCAAGGTCGTGTTAATGCAATGC

upper sequence: Vv08s0056g01110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA20G00260.1 (Glycine max), 3'ss of exon 11
gtatgaggcattaagtttaattacttgaagatgatattgttattattatttttatttttacaattgaagaagaaacttttaatgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcagAGGGATGTGCCTGCTCGCTATCTTCTTCGACTGGGTCAAGGAGAACAAGAACTTGCGACTGATCTTGACTTTAGCCGTCAAGGACGCGTTAATGCTATGC
                               |||   |  || | | |  ||  |    |||||| |   | ||| | ||   ||||       |  | |  |     |    |||||  ||  ||  | | | |||| ||||| ||||| || |||||||||||||| ||||||||||||||||| || || ||||||||||| |||||||| ||||| || |||||||| ||||
------------------------------ttgaggattctaatctgagcttagta---acaatttattgataaattctt---gctttctacactgaagtttatcatttgtttcattttaatcctttttgttttagAGAGATGTTCCTGCACGTTATCTTCTTCGACTTGGTCAAGGAGAACAAGAGCTAGCAACTGATCTTGATTTTAGCCGGCAAGGTCGTGTTAATGCAATGC

upper sequence: Vv08s0056g01110.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G38770.1 (Arabidopsis thaliana), 3'ss of exon 11
gtatgaggcattaagtttaattacttgaagatgatattgttattattatttttatttttacaattga--agaagaaacttttaatgcttctccagttagaatcaagttcctaaagc---at-ttatatgtttactatgtcagAGGGATGTGCCTGCTCGCTATCTTCTTCGACTGGGTCAAGGAGAACAAGAACTTGCGACTGATCTTGACTTTAGCCGTCAAGGACGCGTTAATGCTATGC
                                  || | ||   ||  |  ||  ||||   ||| |   | ||  |  ||||||| ||     ||| ||    |||||  | ||    ||  || |||  |  | | |||||||||||| || || || ||||| |||||  |||||||||| |||||||| ||||| |||||||||||||||||| | ||||| || || ||||| ||||
---------------------------------gtactattggcatcttcgttgcttttgttatttatatggagtcatatttaatgttttat--gtttga-cggagttctgagagtcaaatgctacatggatcttttttcagAGGGATGTACCAGCGCGGTATCTACTTCGTTTGGGTCAAGGTGAACAAGAGCTTGCCACTGATCTTGACTTTAGCAGACAAGGCCGTGTCAATGCCATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttctccagttagaatcaagttcctaaagcatttatatgtttactatgtcagAGGGATGTGCCTGCTCGCTATCTTCTTCGACTGGGTCAAGGAGAACAAGAACTTGCGACTGATCTTGACTTTAGCCGTCAAGGACGCGTTAATGCTATGC
                        tcctaaa  putative branch site (score: 2)
                                 atttatatgtttacta  TA-rich tract