Sequence
atgc intronic sequence ATGC exonic sequence...tcatttttatattctattttctattttctaactgtttgatttgtatgtaagatgcaagggatattttgggcctcattataatttgaattgttgcatgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G386991_T01 (Zea mays), 3'ss of exon 11
--tcatttttatattctattttctattttctaactgtttgatttg--tatgtaagatgcaagggatattttgggcctcattataatttgaattgttgca-----tgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGG
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gtactttcctctctgatgtactctaatcaattacgcatcagtttggccaactgacatcttttaaatggtatgacttttgaaaaagttctaatcattgcaatccatgcagAACCTTGTGATGCAACATGTTGATCATTCTGCTGGAGATCTAATTGATCTTCTTCAAGGACTTCTTCGGTATGATCCTAATGAGCGCCTGAAAGCACATG
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 11
tcatttttatattctattttctattttctaactgtttgatttgtatgtaagatgcaagggatattttgggcctcattataatttgaattgttgcatgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGG
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atgttctatcatccagttttgttccatcaacatgacagaacctgaaatgatatttaatgcaatcccttacctttataatttctctaatattcccctgcagAACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCCTGCAAGGGCTCCTAAGGTACGACCCTTCAGAACGGCTTAAAGCTAAGG
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G35800.1 (Glycine max), 3'ss of exon 9
tcatttttatattctattttctattttctaactgtttgatttgtatgtaagatgcaagggatattttgggcctca--ttataatttgaattgttgcatgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGG
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-tgttctatcgtccaattttttgccatcaacatgacaacacctggaatgatat-taatgcattccctcacctttatattttctatataatattcccctgcagAACCTCATAAGGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTGCAAGGGCTTCTGAGGTACGACCCTTCAGAACCACTTAAAGCTAAGG
upper sequence: Vv08s0040g02640.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G53570.2 (Arabidopsis thaliana), 3'ss of exon 12
tcatttttatattctattttctattttctaactgtttgatttgtatgtaagatgcaagggatattttgggcctcattataatttgaattgttgcatgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGG
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--gtaaata-accttacattggacttgacatccgcttatctgaaatattgaaattaagga---------gaccagtttt--tttgcatttt-----gcagAACCTGATAATGCAGCATGTGGATCACTCAGCCGGTGATCTGATAGACCTATTACAAGGTCTGCTTCGATATGATCCAACAGAGAGGTTCAAGGCAAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71888823|gb|DT037878.1|DT037878EST: CAACCTCTAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCCCGTCTTCAG AACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTC
genomic: CAACCTCTAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCCCGTCTTCAGgtaattgttt ... ttgcatgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtaagatgcaagggatattttgggcctcattataatttgaattgttgcatgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGG
attataatttgaattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcatttttatattctattttctattttctaactgtttgatttgtatgtaagatgcaagggatattttgggcctcattataatttgaattgttgcatgcagAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttggg