1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggagttctctttgtttttctgccatattctaatttattaaattcagtgttttttcattatattcttgctgacaattgttccctcttttatcatgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGATTCTCAATTGCCACAGGTCAGGGCTCACCATCAGACTCCACTGGGCCAA
species | Vitis vinifera |
transcript | Vv08s0032g00280.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGAEST: gi|51052155|gb|CO819417.1|CO819417
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
EST: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGAEST: gi|30322203|gb|CD005465.1|CD005465
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
EST: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGAEST: gi|30321417|gb|CD004679.1|CD004679
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
EST: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGAEST: gi|29783752|gb|CB350180.2|CB350180
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
EST: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGAEST: gi|27579505|gb|CB002200.1|CB002200
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
EST: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGAEST: gi|110386478|gb|EC951075.1|EC951075
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
EST: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGAEST: gi|45770312|gb|CN006164.1|CN006164
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
EST: CACCACCCTCTCTTTCAAGACCATCTTTTAGGCACATCCAAATGCAGCAG GGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
genomic: CACCACCCTCTCTTTCAAGACCATCTCTTAGGCACATCCAAATGCAGCAGgtatagggat ... catgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGA
gtgttttttcattatattcttgctgacaattgttccctcttttatcatgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGATTCTCAATTGCCACAGGTCAGGGCTCACCATCAGACTCCACTGGGCCAA
tgctgac putative branch site (score: 2)
ttgttccctcttttat putative PPT
ttttcattatattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagttctctttgtttttctgccatattctaatttattaaattcagtgttttttcattatattcttgctgacaattgttccctcttttatcatgatgcagGGTAAAAAACTGCAGACTCTTTCCCACAGCCCAAAGGTAAAAACAGCTGGATTCTCAATTGCCACAGGTCAGGGCTCACCATCAGACTCCACTGGGCCAA
- - - - - - - - -tctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacaa