Sequence
atgc intronic sequence ATGC exonic sequence...aggtagtctgtgttttcgtgtttttggttcttctgtcttgatttcactatggatatcagtttttcattttatgttcttcttaattgtttggaataattagGTGACTTTCCCATGGATTGCCCTCTTCATGACAGTCTACTACGTGTTCACTACAAGGGCATGCTTCTTAATGAAGAGAAGACTGTTTTCTATAACACTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01460.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G16440.1 (Glycine max), 3'ss of exon 10
aggtagtctgtgttttcgtgtttttggttcttctgtcttgatttca-ctatggatatcagttt---ttcattttatgttcttcttaattgtttggaataattagGTGACTTTCCCATGGATTGCCCTCTTCATGACAGTCTACTACGTGTTCACTACAAGGGCATGCTTCTTAATGAAGAGAAGACTGTTTTCTATAACACTAG
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-ttttaaaaataattttatactt---gcactcacatttaagtgccagttgtttatttctattcaaagtcttgttatgatatagttttttgtttgtatctaacagGTGATTTTCCAATGGATTGTCCCCTTCATGACAGTCTGCTTCGCGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAGGGTATTCTATGATACAAG
upper sequence: Vv08s0007g01460.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G26350.1 (Glycine max), 3'ss of exon 10
-----aggtagtctgtgttttcgtgtttttggttcttctgtcttgatttcactatggatatcagtttttcattttatgttcttcttaattgtttggaataattagGTGACTTTCCCATGGATTGCCCTCTTCATGACAGTCTACTACGTGTTCACTACAAGGGCATGCTTCTTAATGAAGAGAAGACTGTTTTCTATAACACTAG
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ttttaaaataattt-tacacttgcattca-agtttaagtgccagttgtttatt-tctattcaaagtcctgttatgatattgtattt--ttgtttgtatctaacagGTGATTTTCCAATGGACTGTCCCCTTCATGACAGTCTGCTTCGTGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAGGGTATTCTATGATACAAG
upper sequence: Vv08s0007g01460.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT3G54010.1 (Arabidopsis thaliana), 3'ss of exon 10
-------------------------------------------------aggtagtctgtgttttcgtgtttttggtt----cttctgtcttgatttca-ctatggatatcagtttttcattt----tatgttcttcttaattgtttg---gaataattagGTGACTTTCCCATGGATTGCCCTCTTCATGACAGTCTACTACGTGTTCACTACAAGGGCATGCTTCTTAATGAAGAGAAGACTGTTTTCTATAACACTAG
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gtatgtttcacactttcttttcaactgtctcttatctgtttcaacatggtgcgggtttttgttcttatatatcttgctggggcatctg-ctagattccagctcttgtttatagtttatccgctagactattctgatctacaacgtttgaccaacttattagGCGAGTTTCCAATGGATTGTCCTCTCCAAGATAGTCGTTTAAGCGTTCACTACAAGGGCATGCTTCTCAATGAAGAGAAGACTGTCTTCTATGATAGCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actatggatatcagtttttcattttatgttcttcttaattgtttggaataattagGTGACTTTCCCATGGATTGCCCTCTTCATGACAGTCTACTACGTGTTCACTACAAGGGCATGCTTCTTAATGAAGAGAAGACTGTTTTCTATAACACTAG
tcttaat putative branch site (score: 3)
tttttcattttatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggtagtctgtgttttcgtgtttttggttcttctgtcttgatttcactatggatatcagtttttcattttatgttcttcttaattgtttggaataattagGTGACTTTCCCATGGATTGCCCTCTTCATGACAGTCTACTACGTGTTCACTACAAGGGCATGCTTCTTAATGAAGAGAAGACTGTTTTCTATAACACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - cactatg