Sequence
atgc intronic sequence ATGC exonic sequencegtttgatatcattacccatgaaattctttctcaactattttgaagcatgatattaattgattttcctggtctacattttcatttgagctacgtttttttacaaggatttcttcacttttatagGTTATCACTGAAGCTATCCCAGATACTGTTGGTGAAAAACTTATTGGACTTGTCACTACAAGAGAGCAGATTCCCGATTTGCTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 3'ss of exon 10
gtttgatatcattacccatgaaattctttctcaactattttgaagcatgatattaattgattttcctggtctacattttcatttgagctacgtttttttacaaggatttcttcacttttatagGTTATCACTGAAGCTATCCCAGATACTGTTGGTGAAAAACTTATTGGACTTGTCACTACAAGAGAGCAGATTCCCGATTTGCTAAAG
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-----------------------gtattatccttttatcttg-----tggttaaaattgcttt--ctggt-------tttgctttaactgttgtaaaaaacatcgatttattc--ttttctagGTTATAACTGATGCTATTCCTCGTAATGTTGGTGAAAAACTTATTGGCCTTGTTACAACTAGAGATGAGATCGCAGATTTGCTAAAG
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G12240.1 (Glycine max), 3'ss of exon 11
---------gtttgatatc-----attacccatgaaattctttctc-----aactattttgaagcatgatattaattgat-tttcctggtctacattttcatttgagctacgtttttttacaaggatttcttcactt-ttatagGTTATCACTGAAGCTATCCCAGATACTGTTGGTGAAAAACTTATTGGACTTGTCACTACAAGAGAGCAGATTCCCGATTTGCTAAAG
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gttagtactatctaatatctatttattttagttgagattgttgttttatgaaattattctggatc-tga-attgactgttgtttctttgtcattaattcacttatacatattttctctcatttgtatttcttcttttattgtagGTCATTACTTCAGTGATGCCAGATACTGTTGGTGACAAACTTATTGGGCTTGTGACTTCAAGAGATGAGATTCCTGACCTACTTAAG
upper sequence: Vv08s0007g01060.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G24530.1 (Glycine max), 3'ss of exon 12
------------gtttgatatcattacccatgaaattctttctcaactattttgaagcatgatattaattgat-tttcctggtctacattttcatttgagctacgttttt-ttacaaggatttcttcactt-ttatagGTTATCACTGAAGCTATCCCAGATACTGTTGGTGAAAAACTTATTGGACTTGTCACTACAAGAGAGCAGATTCCCGATTTGCTAAAG
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gttggtactatctattgattttagttgagactggtgttttatgagattaatctggatca-gat-ttgactgttgtttctttgccatcaattcagttatacatatgtttctatctttcatatttcttcttttattgtagGTCATTACTTCAGTGATGCCGGATACTGTTGGTGACAAACTTATTGGGCTTGTGACTTCAAGAGATGAGATTCTAGACCTACTTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctacattttcatttgagctacgtttttttacaaggatttcttcacttttatagGTTATCACTGAAGCTATCCCAGATACTGTTGGTGAAAAACTTATTGGACTTGTCACTACAAGAGAGCAGATTCCCGATTTGCTAAAG
tttcttcacttttat CT-rich tract
tttttttacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgatatcattacccatgaaattctttctcaactattttgaagcatgatattaattgattttcctggtctacattttcatttgagctacgtttttttacaaggatttcttcacttttatagGTTATCACTGAAGCTATCCCAGATACTGTTGGTGAAAAACTTATTGGACTTGTCACTACAAGAGAGCAGATTCCCGATTTGCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT