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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaaaaaaaaattctattcttctccccataactaattcctttttcttttttgtttgaatattaataatgatttcatttcctcctgaacgctgatctctctcttcattgctctcaaattttaataaaagCATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCAATCACTGATATGAAAGAGCGCAAG

Basic information

species Vitis vinifera
transcript Vv07s0130g00410.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00410.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G26360.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaaaaaaaaaaaaattctattcttctccccataactaattcc--tttttcttttttgtttgaatattaataatgatttcatttcctcctgaacgctgatctctctcttcattgctctcaaattttaataaaagCATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCAATCACTGATATGAAAGAGCGCAAG
                  || | | ||   | |||  ||  ||   |    | | |||   |    ||||  ||      | |   | || || |||          |  ||||        ||||  |  | |||||||||||||||||| |||||||  || || || |||||||| ||||||||  |||||||||||||| |||||
-----------------gtactgtcctgtac-taatgaaccccaactgccatctcttgcccgttgtttaagtatataccaactcttttctcaatgct----------tcaattgtc----ggttttggtgca-gCATGCAAATGGTGAAAACGCATGGACTGGTATTGACGGGAACACTGGTGCAATAGCTGATATGAAAGAGAGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808330|gb|FQ405474.1|FQ405474
EST:     AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAG                         CATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA
genomic: AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAGgtaaaaaaaa ... ttaataaaagCATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA
EST: gi|33405452|gb|CF211079.1|CF211079
EST:     AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAG                         CATGCAAATGGATCNAA-TGCATGGATGGGCATAGATGGGAACACGGGTGC
genomic: AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAGgtaaaaaaaa ... ttaataaaagCATGCAAATGG-TGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGC
EST: gi|349823591|gb|FQ415001.1|FQ415001
EST:     AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAG                         CATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA
genomic: AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAGgtaaaaaaaa ... ttaataaaagCATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA
EST: gi|351034297|gb|FQ448094.1|FQ448094
EST:     AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAG                         CATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA
genomic: AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAGgtaaaaaaaa ... ttaataaaagCATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA
EST: gi|110426184|gb|EC992582.1|EC992582
EST:     AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAG                         CATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA
genomic: AGAATTGTGGGGTTAATGTGATACGGACCATGACTGCACTCCAGGGAAAGgtaaaaaaaa ... ttaataaaagCATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcctcctgaacgctgatctctctcttcattgctctcaaattttaataaaagCATGCAAATGGTGAAAATGCATGGATGGGCATAGATGGGAACACGGGTGCAATCACTGATATGAAAGAGCGCAAG
                                           ttttaat  putative branch site (score: 3)
                                    tctcaaattttaataa  TA-rich tract