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...gcaccaagtgattggaattgcatggtatatgcaaggatgaatacaatttacaagaatagtttttgctgattctttatgttatgattgtggttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGATTAGGGAAGCTGCTGGACTATTTAGGCTTCTTAAAACTTTGGAATCTTG
species | Vitis vinifera |
transcript | Vv07s0130g00310.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGAEST: gi|110358574|gb|EC922883.1|EC922883
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGAEST: gi|110423756|gb|EC990107.1|EC990107
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: GCCTAATTCGAAATAAAATTATTAACG TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGAEST: gi|26260610|gb|CA811673.1|CA811673
genomic: GCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGAEST: gi|26261165|gb|CA812228.1|CA812228
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGAEST: gi|110362733|gb|EC926283.1|EC926283
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
EST: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG TTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
genomic: ACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACGgtgagtgtgc ... ttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGA
atttacaagaatagtttttgctgattctttatgttatgattgtggttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGATTAGGGAAGCTGCTGGACTATTTAGGCTTCTTAAAACTTTGGAATCTTG
tgctgat putative branch site (score: 3)
attctttatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaccaagtgattggaattgcatggtatatgcaaggatgaatacaatttacaagaatagtttttgctgattctttatgttatgattgtggttgggtgcagTTCAAGATCTTTTCATTGAAGTTCAAGCCTTCTGTATCGAGTTCTCAAGGATTAGGGAAGCTGCTGGACTATTTAGGCTTCTTAAAACTTTGGAATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
-caccaag
- - - - tgattgg
- - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - gcaagga
- - - - - - - - - - - - - - - - - - - -aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - -acaagaa