1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caaactagagtgaaccatatttcattcctctttactcattcttaaactggcaaaatatgcccgtgtcatttagttaattcacatgttttacgccttgcagATGTTATATTTCTGATATATATATATCAGAGGTGGGTGTATCCGGTGGACAAGAAACGAATAAATGAGTTTGGTTTCGGTGGTGAGGAGGATCAGGCCTC
species | Vitis vinifera |
transcript | Vv07s0130g00170.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTCATAAAAATGCCAGTGCTACATCGGCTTTCTGTGTTCCGTGATG ATGTTATATTTCTGNNNNNNNNNNNNCAGAGGTGGGTGTATCCGGTGGACAEST: gi|110722903|gb|EE099605.1|EE099605
genomic: CTTTGTCATAAAAATGCCAGTGCTACATCGGCTTTCTGTGTTCCGTGATGgtgagttcca ... cgccttgcagATGTTATATTTCTGATATATATATATCAGAGGTGGGTGTATCCGGTGGACA
EST: CTTTGTCATAAAAATGCCAGTGCTACATCGGCTTTCTGTGTTCCGTGATG ATGTTATATTTCTGATATATATAT--CAGAGGTGGGTGTATCCGGTGGACA
genomic: CTTTGTCATAAAAATGCCAGTGCTACATCGGCTTTCTGTGTTCCGTGATGgtgagttcca ... cgccttgcagATGTTATATTTCTGATATATATATATCAGAGGTGGGTGTATCCGGTGGACA
actggcaaaatatgcccgtgtcatttagttaattcacatgttttacgccttgcagATGTTATATTTCTGATATATATATATCAGAGGTGGGTGTATCCGGTGGACAAGAAACGAATAAATGAGTTTGGTTTCGGTGGTGAGGAGGATCAGGCCTC
agttaat putative branch site (score: 4)
tcatttagttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaactagagtgaaccatatttcattcctctttactcattcttaaactggcaaaatatgcccgtgtcatttagttaattcacatgttttacgccttgcagATGTTATATTTCTGATATATATATATCAGAGGTGGGTGTATCCGGTGGACAAGAAACGAATAAATGAGTTTGGTTTCGGTGGTGAGGAGGATCAGGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
caaacta
- - - - - - aaccata
- - - - - - - - - - -tcattcc
- - - - - - - - - - - - - - - - - ctcattc
- - - - - - - - - - - - - - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacatg