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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcagaattctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG

Basic information

species Vitis vinifera
transcript Vv07s0031g02240.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G32920.1 (Glycine max), 3'ss of exon 7
gtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcagaattctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG
                                                                                   ||  | |   | | | |  | |  |    |   |  |  || | ||   |||   ||  ||| |     |  |  ||| || |||   |||||    | |||||||||||||||| |||||||||||| |||||||||||
----------------------------------------------------------------------------------tttaattaaaaaatagttcatttagtgagaaaaactttgctgta-gttttgaattttaagtttttaatgtttgttcctaactgatttgtttttt----cttgcagAATGCGTTCCAAATAACATATTTCTTGTGGATATGG

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 11
gtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcagaattctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG
                                                                                 ||| ||| |     | || |  || | |   |    ||  ||   |||   |||   |   ||  |    ||  |  ||| | ||||   |||||  | | |||||||||||||||| |||||||||||| |||||||||||
---------------------------------------------------------------------------------cctagtttaacc-ttagcattagtgagagaaaa---acatattggagttttgaattttgagttgttaatgcttgtacctaaccaatt--ttttttcttacttgcagAATGCGTTCCAAATAACATATTTCTTGTGGATATGG

upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G36170.1 (Glycine max), 3'ss of exon 10
gtactgagcagcacctccatactaaaatgaactagttcgtaaattttgtaaaaacttagcagaattctttgagttcaatgtccttgttcattgacttgcttgtgtcatatttatgtcactaatgaaagtagagaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG
                                                              | || |  ||||| ||  |  || |     ||  |  |||| | || ||||| | |  |||     ||   |||| ||                    | |||| ||| ||| |    | |||||||||||||||| ||||||||| || |||||||||||
-------------------------------------------------------------tacttgtgagagttaaa-atgtttatctgaagaagt-tttgttttat-tttattttatcaat-----tattaaaagttagc------------------aactaactgattttcttacacttgcagAATGCGTTCCAAATAACATATATCTTGTGGATATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688552|gb|EC920354.1|EC920354
EST:     TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAG                         AATGCGTTCCAGATAACATATTTCCTGTGGATATGG
genomic: TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagca ... gtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG
EST: gi|122689026|gb|EC930382.1|EC930382
EST:     TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAG                         AATGCGTTCCAGATAACATATTTCCTGTGGATATGG
genomic: TTAGTTGGCCTCAGTTAGTTCTTCATCTTATCCATTTTGTTTTGTTTCAGgtactgagca ... gtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagctacttttcttccactaatggctatctaattgactttttggtgcatgcagAATGCGTTCCAGATAACATATTTCCTGTGGATATGG
                           tatctaatt  TA-rich tract