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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctaattttgcagggcaaatacttcattgtgctcctgtggattccaatgatacttagctgtgataattaatttgactattgactgcagGCTCAACAGCTTAACAAAGACATATTTGAGACCATATACTACCATGCTCTAAAGGCTTCTTGTGAGTTGGCTATGAGAGAAGGCCCCTATGAGACTTATG

Basic information

species Vitis vinifera
transcript Vv07s0031g01990.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G39500.1 (Glycine max), 3'ss of exon 11
gtaaagctaattttgcagggcaaatacttcattgtgctcctgtggattccaatgatacttagctgtgataattaatttgactattgactgcagGCTCAACAGCTTAACAAAGACATATTTGAGACCATATACTACCATGCTCTAAAGGCTTCTTGTGAGTTGGCTATGAGAGAAGGCCCCTATGAGACTTATG
||||| ||| || ||   |||   | ||   || |  ||       ||  | |  | |||   | | ||| || | |||  |||| | |||||||||| ||| | ||| | || ||||||||||| |||||||| |||||||||||  |||| ||||| ||||||   | |||||| ||||||||||| ||| 
gtaaatctacttctg--aggc---tgct--gttatattc------gttgtatttgtgcttcagtctaatagttcacttggatattaa-tgcagGCTCAGCAGTTAAACCAGGAGATATTTGAGACTATATACTATCATGCTCTAAAAACTTCATGTGATTTGGCTGCAAAAGAAGGTCCCTATGAGACATATA

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 11
gtaaagctaattttgcagggcaaatacttcattgtgctcctgtggattccaatgatacttagctgtgataattaatttgactattgactgcagGCTCAACAGCTTAACAAAGACATATTTGAGACCATATACTACCATGCTCTAAAGGCTTCTTGTGAGTTGGCTATGAGAGAAGGCCCCTATGAGACTTATG
||||| ||| ||        |||   ||||    || |  | |   ||  | |   ||||   | ||||| || | |||  ||||   |||||||||| ||| | ||||| || ||||||||||| ||||| || |||||||||||  |||| ||||  ||||||   |  ||||| |||||||| || ||  
gtaaatctactt--------caagggcttc----tgtttatattcgttttatttccacttca-tatgatagtttacttggatatta--tgcagGCTCAGCAGTTAAACAAGGAGATATTTGAGACTATATATTATCATGCTCTAAAAACTTCATGTGGTTTGGCTGCAAAGGAAGGTCCCTATGAAACATACA

upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G32070.1 (Glycine max), 3'ss of exon 11
gtaaagctaattttgcagggcaaatacttcattgtgctcctgtggattccaatgatacttagctgtgataattaatttgactattgactgcagGCTCAACAGCTTAACAAAGACATATTTGAGACCATATACTACCATGCTCTAAAGGCTTCTTGTGAGTTGGCTATGAGAGAAGGCCCCTATGAGACTTATG
|||||   |  |||   || |   |  |||||    || |  |  |  | |  | | | |   | ||||| ||    ||   || |  |||||||||| ||| | ||||| || ||||||||||| |||||||| ||||| |||||  |||| | ||| ||||||   | |||||| |||||||| || ||| 
gtaaa-taacatttatgggactgctttttcat----ctacaatttaagctagaggttcatcaatttgatagttttcctggacatgggatgcagGCTCAGCAGTTGAACAAGGATATATTTGAGACTATATACTATCATGCACTAAAAACTTCATCTGAATTGGCTGCAAAAGAAGGTCCCTATGAAACATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtggattccaatgatacttagctgtgataattaatttgactattgactgcagGCTCAACAGCTTAACAAAGACATATTTGAGACCATATACTACCATGCTCTAAAGGCTTCTTGTGAGTTGGCTATGAGAGAAGGCCCCTATGAGACTTATG
                                           tattgac  putative branch site (score: 2)
                             ataattaatttgacta  TA-rich tract