Sequence
atgc intronic sequence ATGC exonic sequence...tggaccttgtgggtgaacattttatatgtgtgtatgaacttgtgtctctgtattttttgtttcaaaaatttgctcagctctcaatttccttcaattgtagGTCGTCTGTTCAAAAAGATAGAACTGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G43960.1 (Glycine max), 3'ss of exon 12
tggaccttgtgggtgaacattttatatgtgtgtatgaacttgtgtctctgtattttttgtttcaaaaatttgctcagctctcaatttccttcaattgt--agGTCGTCTGTTCAAAAAGATAGAACTGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGC
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agatatttttggtttcaaatgatccattaattgatga--ttgtaataatttttttaagggtgtgtgtgtgtgacttattgctaatttttttttatctctcagGTTATCTGTTTAAGAAAATAGAACTGAGTGAATCCATCAGATATGCTTCTGGGGATCCCATTGAAAGCTGGCTTAACAAATTACTTTGCTTAGATGTTTC
upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G31850.1 (Glycine max), 3'ss of exon 11
-----------------------------------------------------------------------------------------tggaccttgtgggtgaac------attttatatgtgtgtatgaac--ttgtgtctctgtattttttgtttcaa-----aaatttgctcagctctcaatttccttcaattgtagGTCGTCTGTTCAAAAAGATAGAACTGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGC
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gtacttatttgtgctcagagcttttagaagtcagtttaaataaataatgtgcatgtcatgtgctgttttgtatggaaacacagtctaagtggattatgaaattaagataattggttttcaatgttctgttaaatgattgtaatacaatattttcaaggtccatgtgcaatattgctaaatcttgaattatat---gtttcagGTCGTCTGTTTAAGAAAATAGAATTGAGTGAATCTATCAGATATGCTTCTGGGGATCCCGTTGAAAGCTGGCTTAACTCTCTACTTTGCTTAGATGTTTC
upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G15130.1 (Glycine max), 3'ss of exon 11
--------------------------------------------------------------------------------------tggaccttgtgggtgaac------attttatatgtgtgtatgaac--ttgtgtctctgtatttt-----ttgtttcaaaaatttgctcagctctcaatttccttcaattgtagGTCGTCTGTTCAAAAAGATAGAACTGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGC
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gtacttatttacgctcagcttttgcatgtcagtttaaataaatatgtgcatgtcatgtgctgttttgaatggaaacacagtctaagtggattatgaaattaagatcattggttttctatgttctgttaaatgattgtaatacaatcttttcaaagtccttgtgcaatattgctaaatcttgaattatat---gtttcagGTCGCCTGTTTAAGAAAATAGAATTGAGTGAATCCATCAGATATGCTTCTGGGGATCCCATTGAAAGCTGGCTTAACTCTCTACTTTGCTTAGATGCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctgtattttttgtttcaaaaatttgctcagctctcaatttccttcaattgtagGTCGTCTGTTCAAAAAGATAGAACTGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGC
ctctcaatttccttc CT-rich tract
tattttttgtttcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggaccttgtgggtgaacattttatatgtgtgtatgaacttgtgtctctgtattttttgtttcaaaaatttgctcagctctcaatttccttcaattgtagGTCGTCTGTTCAAAAAGATAGAACTGAGTGAATCTATCAGATATGCTTCTGGTGATCCAATTGAATCATGGCTGAATACATTACTTTGCTTGGATGTTGC
- - - - gtgggtg
- - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcaa