1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ggtgtatcggaccgcttggttaaatattcacaatagtatgttataactaattttatgaaaaatctatgtctcacctcttccttatattgtcatatggcagGGTGTAATCACCGAGGATGTAATTCAGCTCAGGAAATACATCAGAGCACCTGGAATGGCTGTCCTCCAGTTTG
species | Vitis vinifera |
transcript | Vv07s0031g01540.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATG-CATC-TCAGAGCTG-TNGAAAGATCAATA-TGTTGCAGA-GACTTG GGTG-AATCACCGAGGAT-TAATTCAGCTCAGGAAATACATCAGAGCACCTEST: gi|34544532|gb|CF512764.1|CF512764
genomic: ATGCCATCTTCAGAGCTGTTGGAAAGATCAATATTGTTGCAGAGGACTTGgtatgtttta ... catatggcagGGTGTAATCACCGAGGATGTAATTCAGCTCAGGAAATACATCAGAGCACCT
EST: ATGCCATCTTCAGAGCTGTTGGAAAGATCAATATTGTTGCAGAGGACTTG GGTGTAATCACCGAGGATGTAATTCAGCTCAGGAAATACATCAGAGCACCT
genomic: ATGCCATCTTCAGAGCTGTTGGAAAGATCAATATTGTTGCAGAGGACTTGgtatgtttta ... catatggcagGGTGTAATCACCGAGGATGTAATTCAGCTCAGGAAATACATCAGAGCACCT
actaattttatgaaaaatctatgtctcacctcttccttatattgtcatatggcagGGTGTAATCACCGAGGATGTAATTCAGCTCAGGAAATACATCAGAGCACCTGGAATGGCTGTCCTCCAGTTTG
ttttatgaaaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgtatcggaccgcttggttaaatattcacaatagtatgttataactaattttatgaaaaatctatgtctcacctcttccttatattgtcatatggcagGGTGTAATCACCGAGGATGTAATTCAGCTCAGGAAATACATCAGAGCACCTGGAATGGCTGTCCTCCAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - -ccgcttg
- - - - - - - - - - - - tattcac
- - - - - - - - - - - - - - - - - - - - - - aactaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaa