1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaattagagataaacttattattctaccaccaatagatggattcaaggtaacttcaaaacagaggaatattcattttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAGATGGTGTAGCTGATCGTGTATCTCGAAGGTCTCATGAGATTTGCGGAC
species | Vitis vinifera |
transcript | Vv07s0031g00600.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAEST: gi|349818091|gb|FQ408866.1|FQ408866
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAEST: gi|110429617|gb|EC996114.1|EC996114
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAEST: gi|30129481|gb|CB914820.1|CB914820
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAEST: gi|351020076|gb|FQ445683.1|FQ445683
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAEST: gi|349811719|gb|FQ409716.1|FQ409716
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAEST: gi|349818104|gb|FQ408879.1|FQ408879
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
EST: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAG GATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
genomic: GTCAGTATTTTGGTAGATTTGGCCGTATTTTGGATGTTTATGTTCCCAAGgtaaattaga ... ttttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAA
accaatagatggattcaaggtaacttcaaaacagaggaatattcattttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAGATGGTGTAGCTGATCGTGTATCTCGAAGGTCTCATGAGATTTGCGGAC
aggtaac putative branch site (score: 3)
ttcatttt putative PPT
aatattcattttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattagagataaacttattattctaccaccaatagatggattcaaggtaacttcaaaacagaggaatattcattttatgtagGATCCTAAGAGAAGTGGCCATAGGGGCTTTGGTTTTGTAACCTTTGCTGAAGATGGTGTAGCTGATCGTGTATCTCGAAGGTCTCATGAGATTTGCGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT