Sequence
atgc intronic sequence ATGC exonic sequence...actgacatcaactggcattgtcaactgctggtatttgatggcaatatcttttggcaatacttttgtttggactctgaacttgattcccatatatttgcagGTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G05760.1 (Glycine max), 3'ss of exon 15
-actgacatcaactggcattgtca-actgctggtatttgatggcaatatcttttggcaatacttttgtttggactctgaacttgattcccatatatttgc--agGTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAG
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tttctgtgtctgtt--ctttgttttgctaattgtacttgaagatcagttcttttc-tattatatttgctgtgatggc-aattaacatctaatatgcttacacagGTTCTTCTTGGAAGGTCTGATGTATCCGGCTGGGGAGCCTTCTTAAAG
upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA01G39490.1 (Glycine max), 3'ss of exon 15
-actgacatcaactggcattgtca-actgctggtatttgatgg-caatatcttttggcaatactt-ttgtttggactctgaacttgattcccatatatttgcagGTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAG
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tttctgtgtctgtt--ctttgttttgctaattgtacttgaagatcagtaattttctattatatttgctgtgatggcaattaacata--taatatgcttacacagGTTCTTCTTGGAAGGTCTGATATATCAGGTTGGGGAGCCTTCTTAAAG
upper sequence: Vv07s0031g00320.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G23380.1 (Arabidopsis thaliana), 3'ss of exon 13
actgacatcaactggcattgtcaactgctggtatttgatggcaatatcttttggcaatacttt---tgtttggactctgaacttgattcccatatatttgcagGTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAG
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---gtaaatacttagccttgttaactaaatatctatgatctgca-atcaaatgattaaacatgaaatggctaaatttcctcctcttttttatgttaatttcagGTTTTACTTGGAATATCTGATGTTTCTGGTTGGGGAGCTTTCTTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcttttggcaatacttttgtttggactctgaacttgattcccatatatttgcagGTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAG
acttgat putative branch site (score: 5)
atatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actgacatcaactggcattgtcaactgctggtatttgatggcaatatcttttggcaatacttttgtttggactctgaacttgattcccatatatttgcagGTTCTGCTTGGGAGGTCTGATGTATCTGGTTGGGGAGCGTTCTTAAAG
- - -catcaac
- - - - - - - - - - -caactgc
- - - - - - - - - - - - - - - - - -tgatggc
- - - - - - - - - - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attccca