1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatggccatgtgaaattgaaaaattttcgacataaattttcagtatctttcaggataacataaagttattgacttcttggtctttttaatgcgataataagaaaattttgagatggcatcataagcatgaggtttccatccttttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTCAGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCA
species | Vitis vinifera |
transcript | Vv07s0005g05030.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG GTTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTEST: gi|349827765|gb|FQ422633.1|FQ422633
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTEST: gi|351056897|gb|FQ443524.1|FQ443524
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTEST: gi|351024484|gb|FQ426293.1|FQ426293
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTEST: gi|351046710|gb|FQ453326.1|FQ453326
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
EST: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTG ATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
genomic: TCAACTCTGCTACAGAAACAGGACCCAGCATCCCTCAAATTCTTCATTTGgtatggccat ... ttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTT
aagaaaattttgagatggcatcataagcatgaggtttccatccttttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTCAGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCA
tttccatccttttctc CT-rich tract
aattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggccatgtgaaattgaaaaattttcgacataaattttcagtatctttcaggataacataaagttattgacttcttggtctttttaatgcgataataagaaaattttgagatggcatcataagcatgaggtttccatccttttctctgtagATTTGCAATGGAAATGATGAAAAACCTACAGCAAGCAAGCGTGGTGCCCTTCAGCAATTAATTGAAGCTTCTGTGGCTGATGATCAAGCCATTTGGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT