Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccatagatttgatccattcattttgacattctccttccatgatttagagcagaattagtataagtttcatggctttcagccatctcatttccctgtatggttaaagactcggcacaatagaaggcatggaaattgaactctaaattaattaaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCT

Basic information

species Vitis vinifera
transcript Vv07s0005g02440.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA03G38430.2 (Glycine max), 3'ss of exon 11
gtatgccatagatttgatccattcattttgacattctccttccatgatttagagcagaattagtataagtttcatggctttcagccatctcatttccctgtatggttaaagactcggcacaatagaaggcatggaaattgaactctaaattaattaaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCT
                                                                 |  ||||||  |      |  |   | ||   |   ||  || |  | |     |  |   |     | ||  |||    |||  | ||   || |   ||  |||||    |||||    ||||||||||||||| ||| ||||| | | | |||||||| ||||||||| | |||||||||||||| |||||||| || |||||||
----------------------------------------------------------------gtgtgtttcaaagtgac--gttaatgccttgggcgaaattattcactatttattgctctcagaaaagagtaatctga----taagctgat---atatcttatcctgcagCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCT

upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA19G41030.1 (Glycine max), 3'ss of exon 11
gtatgccatagatttgatccattcattttgacattctccttccatgatttagagcagaattagtataagtttcatggctttcagccatctcattt-ccctgtatggttaaagactcggcacaatagaaggcatggaaattgaactctaaattaattaaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCT
                                               | ||   || | | |  || | |      || ||  |  |  | |||  |  | ||| |||     |||      ||| |||    |  |  |||    |||  | ||  |  ||   ||  |||||   ||||||    ||||||||||||||| ||| ||||| | | | |||||||| ||||||||| | |||||||||||||| || ||||| || |||||||
----------------------------------------------gtctaagacaaagtga-cattaat------gccttgggtgaaattattcactatttattgtt-----ctc------ataaaaga---gtcatctga----taagctgatgtatctt---atcctgcagCCAATTGCAATTGCTGTTGGAGACTGGTTTTTTGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCT

upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G27960.1 (Glycine max), 3'ss of exon 11
gtatgccatagatttgatccattcattttgacattctccttccatgatttagagcagaattagtataagtttcatggctttcagccatctcatttccctgtatggttaaagactcggcacaatagaaggcatggaaattgaactct-aaattaattaaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCT
                                                               |  ||  |||||   |   |      ||||| | |    |  | |     ||  | | ||        ||   ||||  |||  ||| ||||  ||| |   |   |||||   |||||||   ||||||||||||||||||| ||||||  |   |||||||| || |||||| | ||||| |||||||||| |||||| || ||||| |
------------------------------------------------------------ggatgaaatattcataattcataat----tcattactcaagct--tcatgccttcccccctat------tctgtttattggtctcagaaaataat--aatctattacgatgcagCCAATTGCAGTTGCTGTTGGAGACTGGTATTTTGATCGAGAAGTTGTCAAAGCTATTGACTGTGCTTACCCATGTGACAACAGCTGCCATAATCTGGTGT

upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA02G00930.1 (Glycine max), 3'ss of exon 11
gtatgccatagatttgatccattcattttgacattctccttccatgatttagagcagaattagtataagtttcatggctttcagccatctcatttccctgtatggttaaagactcggcacaatagaaggcatggaaattgaactctaaattaattaaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCT
                                                                   | |  | ||| |   |    ||  | |||  |     |||  |       | || |     |  |    ||||  |||  ||   | ||   ||| | |  |||||   |||||||   || |||||||||||||||| ||||||  |   |||||||| || |||||| | ||||| |||||||||| |||||| || ||||| |
-------------------------------------------------------------------aatgccttggatga-aatattcataattcattactaagtttcatgtctttcccatttctctgttt----attggcctcagaaaataataccctttta-tgatgcagCCAATTGCAGTTGCTATTGGAGACTGGTATTTTGATCGAGAAGTTGTCAAAGCTATTGACTGTGCTTACCCGTGTGACAACAGCTGCCATAATCTGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatagaaggcatggaaattgaactctaaattaattaaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACAACACCTGCCACAACCTGGTCT
                             aattaat  putative branch site (score: 3)
                aaattgaactctaaat  TA-rich tract