1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gcccttgtatatgtgattcatgttatgatacctagaaaacaagtctttttgtcttcagcatttgactttgatatgtctgctcgtttctattttctggcagGAATTAGCAGATCATACTGTTGAGGTGAACGTGCAACATGAGGTGCTTGATGGGATGTTCACTTTCTATGATTCTACAAAGGCCAGACTTAACATTTACC
species | Vitis vinifera |
transcript | Vv06s0080g00880.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGCACCATTTTGCTCAAAGAATGACCCATTTATCCTGGCACTGAAAAAG GAATTAGCAGATCATACTGTTGAGGTGAATGTGCAACATGAGGTGCTTGATEST: gi|352773102|gb|FQ470717.1|FQ470717
genomic: TGGCACCATTTTGCTCAAAGAATGACCCATTTATCCTGGCACTGAAAAAGgtttgtttgt ... tttctggcagGAATTAGCAGATCATACTGTTGAGGTGAACGTGCAACATGAGGTGCTTGAT
EST: TGGCACCATTTTGCTCAAAGAATGACCCATTTATCCTGGCACTGAAAAAG GAATTAGCAGATCATACTGTTGAGGTGAACGTGCAACATGAGGTGCTTGATEST: gi|32270593|gb|CD719752.1|CD719752
genomic: TGGCACCATTTTGCTCAAAGAATGACCCATTTATCCTGGCACTGAAAAAGgtttgtttgt ... tttctggcagGAATTAGCAGATCATACTGTTGAGGTGAACGTGCAACATGAGGTGCTTGAT
EST: TGGCACCATTTTGCTCAAAGAATGACCCATTTATCCTGGCACTGAAAAAG GAATTAGCAGATCATACTGTTGAGGTGAATGTGCAACATGAGGTGCTTGAT
genomic: TGGCACCATTTTGCTCAAAGAATGACCCATTTATCCTGGCACTGAAAAAGgtttgtttgt ... tttctggcagGAATTAGCAGATCATACTGTTGAGGTGAACGTGCAACATGAGGTGCTTGAT
tttttgtcttcagcatttgactttgatatgtctgctcgtttctattttctggcagGAATTAGCAGATCATACTGTTGAGGTGAACGTGCAACATGAGGTGCTTGATGGGATGTTCACTTTCTATGATTCTACAAAGGCCAGACTTAACATTTACC
ctcgtttctattttct CT-rich tract
tttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccttgtatatgtgattcatgttatgatacctagaaaacaagtctttttgtcttcagcatttgactttgatatgtctgctcgtttctattttctggcagGAATTAGCAGATCATACTGTTGAGGTGAACGTGCAACATGAGGTGCTTGATGGGATGTTCACTTTCTATGATTCTACAAAGGCCAGACTTAACATTTACC
-cccttgt
- - - - - - - - -tcatgtt
- - - - - - - - - - - - -tgatacc
- - - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgc