Sequence
atgc intronic sequence ATGC exonic sequence...taaactatgaaaaggtgaattccccttctcagtttttgtcttgaatgactcaatgttgcatggtagtgatgtggtggttctattttcttacctaatctagGTGGAATAAACTCATTCAAAAACCATTTGACGAGGGTGATGAGAGAGGATTAAAGTTGGTCCAATCCATCTTAAAGCCAATCATGTTAAGAAGAACAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G05390.1 (Glycine max), 3'ss of exon 11
--taaactatgaaaa---ggtgaattccccttctcagtttttgtcttgaatgactcaatgttgcatggtagtgatgtggtggttctattttcttacctaatctagGTGGAATAAACTCATTCAAAAACCATTTGACGAGGGTGATGAGAGAGGATTAAAGTTGGTCCAATCCATCTTAAAGCCAATCATGTTAAGAAGAACAAAG
||| ||| | || ||| | | | || | | || | || | |||| || ||| ||| || || | || | ||| | ||||||||||| ||||| ||||||||||||||||| | |||||||| ||||| | ||||| || ||||| || || |||||||||||||| || ||||| ||
tataagttattgctactctgtttattactttgattgtttactcttttaagtgggt--atgtggc-tgg-agtactggactgaagat-ttgttttatatggtctagGTGGAACAAACTTATTCAAAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAA
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G30540.1 (Glycine max), 3'ss of exon 12
taaactatgaaaaggtgaattccccttctcagtttttgtcttgaatgactcaatgttgcatggtagtgatgtggtggttctattttctt-acctaatctagGTGGAATAAACTCATTCAAAAACCATTTGACGAGGGTGATGAGAGAGGATTAAAGTTGGTCCAATCCATCTTAAAGCCAATCATGTTAAGAAGAACAAAG
|| ||| | || | | | | ||| | | | | | | | ||| | || |||| ||| | | |||||||||||| ||||| ||||| ||||||||||| | |||||||| ||||| | ||||| || ||||| || || |||||||||||||| || ||||| ||
-aagttattcctaatctgtttattactttgactgtttactgtttttaagtgggtatgtggctggagtactagactgtgaagatttgctttatatgatctagGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAA
upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 11
taaactatgaaaaggtgaattccccttctcagtttttgtcttgaatgactcaatgtt--gcatggtagtgatgtggtggttctatttt----cttacctaatc--tagGTGGAATAAACTCATTCAAAAACCATTTGACGAGGGTGATGAGAGAGGATTAAAGTTGGTCCAATCCATCTTAAAGCCAATCATGTTAAGAAGAACAAAG
|| | || || || | |||| | ||| || || ||| | |||| | | | || || ||| | || | || ||||||||||||||| | ||||| |||||||| ||||||||||||||||| |||||| | || || || |||||||| || |||||| | || |||||||||
--------------gtaagggtcc-ttatctatctttggttggaaacacataacgtttggtatggaattacttgaagctttttaatttggaacatattttattcttagGTGGAATAAACTTGTCCAAAAGCCATTTGAAGAGGGTGATGAGAGAGGGTTAAAGCTAGTGCAGTCTATCTTAAAACCTATCATGCTTAGGAGAACAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgactcaatgttgcatggtagtgatgtggtggttctattttcttacctaatctagGTGGAATAAACTCATTCAAAAACCATTTGACGAGGGTGATGAGAGAGGATTAAAGTTGGTCCAATCCATCTTAAAGCCAATCATGTTAAGAAGAACAAAG
ttctattttcttacct CT-rich tract
tattttctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaactatgaaaaggtgaattccccttctcagtttttgtcttgaatgactcaatgttgcatggtagtgatgtggtggttctattttcttacctaatctagGTGGAATAAACTCATTCAAAAACCATTTGACGAGGGTGATGAGAGAGGATTAAAGTTGGTCCAATCCATCTTAAAGCCAATCATGTTAAGAAGAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - atgaaaa
- - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - ctcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgg