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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacttcttgattcctttgtgttgtccatatccttgcattgaaaaagttatctttaatctcttcttttggattttgcattttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAAATTGAGAAGGTTCTAGTAGACGTTCACAAGCAGTCTATGGCCAAACTTG

Basic information

species Vitis vinifera
transcript Vv06s0061g01040.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351012857|gb|FQ430420.1|FQ430420
EST:     CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAAT--AATCTGCTCACCCTAATCAA
genomic: CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
EST: gi|30301734|gb|CB978528.1|CB978528
EST:     CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
genomic: CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
EST: gi|38516556|gb|CF983731.1|CF983731
EST:     CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
genomic: CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
EST: gi|351012088|gb|FQ429894.1|FQ429894
EST:     CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAAT--AATCTGCTCACCCTAATCAA
genomic: CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
EST: gi|351016543|gb|FQ423970.1|FQ423970
EST:     CAATATGTGTCTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
genomic: CAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
EST: gi|351030739|gb|FQ438577.1|FQ438577
EST:     CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAAT--AATCTGCTCACCCTAATCAA
genomic: CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
EST: gi|349814521|gb|FQ399161.1|FQ399161
EST:     CATCTGGATTCTGCCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAAT--AATCTGCTCACCCTAATCAA
genomic: CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA
EST: gi|351049114|gb|FQ431658.1|FQ431658
EST:     CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATG                         GTATTCAACCCCAATCCTTTACTTCCAAT--AATCTGCTCACCCTAATCAA
genomic: CATCTGGATTCTGTCGTGAATTGGTCAATATGTGTGTCAGCAAAGGAATGgtatgacttc ... ttttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcattgaaaaagttatctttaatctcttcttttggattttgcattttttccagGTATTCAACCCCAATCCTTTACTTCCAATACAATCTGCTCACCCTAATCAAATTGAGAAGGTTCTAGTAGACGTTCACAAGCAGTCTATGGCCAAACTTG
                  ctttaat  putative branch site (score: 4)
                                      ttttgcattttttcc  putative PPT
        aaaaagttatctttaa  TA-rich tract