1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...acttcaatgttgaacttcagagaaaatatttcactagatgtattttaagcacagctgtaattgattttttttttttcaaaaaaaaatatgatcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTGGAGGAAAAGCATTCGCTACATACACCAATGCTAAAAGGATAGTCAAGC
species | Vitis vinifera |
transcript | Vv06s0004g06020.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAG GAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTEST: gi|110731931|gb|EE106772.1|EE106772
genomic: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAGgtacacttcc ... atcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
EST: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAG GAGATGAGGCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTEST: gi|30251461|gb|CB969194.1|CB969194
genomic: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAGgtacacttcc ... atcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
EST: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAG GAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTEST: gi|30251459|gb|CB969192.1|CB969192
genomic: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAGgtacacttcc ... atcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
EST: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAG GAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTEST: gi|110701622|gb|EE079402.1|EE079402
genomic: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAGgtacacttcc ... atcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
EST: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAG GAGATGAGGCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTEST: gi|28960619|gb|CB340317.1|CB340317
genomic: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAGgtacacttcc ... atcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
EST: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAG GAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTEST: gi|30251485|gb|CB969218.1|CB969218
genomic: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAGgtacacttcc ... atcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
EST: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAG GAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
genomic: GACAGCTGCTAAATATTCTGGGTGCAATCTATAGGTACAAGAAGTTAAAGgtacacttcc ... atcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATT
taagcacagctgtaattgattttttttttttcaaaaaaaaatatgatcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTGGAGGAAAAGCATTCGCTACATACACCAATGCTAAAAGGATAGTCAAGC
aattgat putative branch site (score: 4)
taattgattttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcaatgttgaacttcagagaaaatatttcactagatgtattttaagcacagctgtaattgattttttttttttcaaaaaaaaatatgatcatggcagGAGATGAGCCCTGAAGAACGAAAGAATACAACACCACGCACGATCATGATTGGAGGAAAAGCATTCGCTACATACACCAATGCTAAAAGGATAGTCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - caatgtt
- - - - - - - - - - agaaaat
- - - - - - - - - - - - - - - - - - - - - - - aagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa