1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtagtttacattttttttaattattctcattgctatgcctaacctggaaattttcttgtacacttgagttactgtgctattaccaacctagataatttcttgtacacttcagGTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAG
species | Vitis vinifera |
transcript | Vv06s0004g04390.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCGACTCATGGAAGGAGAGAACACTGGGCCAATCAACATTGGAAACCCAG GTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAGEST: gi|71888765|gb|DT037820.1|DT037820
genomic: TCGACTCATGGAAGGAGAGAACACTGGGCCAATCAACATTGGAAACCCAGgtagtttaca ... tacacttcagGTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAG
EST: TCGACTCATGGAAGGAGAGAACACTGGGCCAATCAACATTGGAAACCCAG GTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAGEST: gi|56408375|gb|CX016627.1|CX016627
genomic: TCGACTCATGGAAGGAGAGAACACTGGGCCAATCAACATTGGAAACCCAGgtagtttaca ... tacacttcagGTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAG
EST: TCGTCTCATGGAAGGAGAGAACACTGGGCCAATCAACATTGGAAACCCAG GTGAATT-ACTATGCTCGAGCTTGCTGAGACAGTGAAGGAG
genomic: TCGACTCATGGAAGGAGAGAACACTGGGCCAATCAACATTGGAAACCCAGgtagtttaca ... tacacttcagGTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAG
gtacacttgagttactgtgctattaccaacctagataatttcttgtacacttcagGTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAG
tttcttgt CT-rich tract
tagataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttacattttttttaattattctcattgctatgcctaacctggaaattttcttgtacacttgagttactgtgctattaccaacctagataatttcttgtacacttcagGTGAATTTACTATGCTCGAGCTTGCTGAGACAGTGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG