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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccataattcgtaatcatgcaagttttctatctaatgttgttattcgatacctgtgttgaagtttcagctcttacactgttagttgacctgaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG

Basic information

species Vitis vinifera
transcript Vv06s0004g03140.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03140.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 11
gtccataattcgtaatcatgcaagtttt--ctatctaatgttgttattcgatacctgtgttgaagtttcagctcttacactgttagttgacctgaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
||   | || |  ||   ||    ||     ||||    ||   ||||  ||   |  ||   | | | |||  | ||| | | | |||| ||     ||||||||||| ||||||||||||||||||| |||||||| |||||
gtttcttatgcacaacattgttttttgcaattatcctgcgtgtgtattttatgtgtacgt--gaatcttagccatcacattttcatttgatctttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCCTCAAG

upper sequence: Vv06s0004g03140.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G15900.1 (Glycine max), 3'ss of exon 11
gtccataattcgtaatcatgcaagttttc-----tatctaatgttgttattcgatacctgtgttgaagtttcagctcttacactgttagttgacctgaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
||  || |||  ||  |||   | ||||      ||||     |   | ||  ||   | |||   | | | |||  | ||| ||| | |||| ||     ||||||||||| ||||||||||||||||||| |||||||| || ||
gtttattatt-atacacatcatattttttgcaattatcctgcatatgtgttttatgtttatgt--gaatcttagccatcacattgtcaattgatctttggttacagGGGAAAATTGCTGACATGTATACTTCATTACAGTCTTCTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32247850|gb|CD713669.1|CD713669
EST:     GGCAGAGAGAACAGTTTGGCCGTCCAATTGGAGAATTTCAGTTTATACAG                         GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
genomic: GGCAGAGAGAACAGTTTGGCCGTCCAATTGGAGAATTTCAGTTTATACAGgtccataatt ... gaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
EST: gi|32271070|gb|CD720229.1|CD720229
EST:     GGCAGAGAGAACAGTTTGGCCGTCCAATTGGAGAATTTCAGTTTATACAG                         GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
genomic: GGCAGAGAGAACAGTTTGGCCGTCCAATTGGAGAATTTCAGTTTATACAGgtccataatt ... gaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
EST: gi|30322661|gb|CD005923.1|CD005923
EST:     GGCAGAGAGAACAGTTTGGCCGTCCAATTGGAGAATTTCAGTTTATACAG                         GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
genomic: GGCAGAGAGAACAGTTTGGCCGTCCAATTGGAGAATTTCAGTTTATACAGgtccataatt ... gaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatacctgtgttgaagtttcagctcttacactgttagttgacctgaaaatacagGGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG
                                            tgaaaata  TA-rich tract