Sequence
atgc intronic sequence ATGC exonic sequence...tttttctcagcaaaggactgtgaatacccaatatttactggaggaatttcatggtttagaaagtaatgcattgagtatgacattttgcactcttttgcagGTGGAGGATATGTGGTATCTCCTGTAAACCAGGGGAAACAATCAGTTGTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G069976_T01 (Zea mays), 3'ss of exon 12
tttttctcagcaaaggactgtgaatacccaat--atttactggaggaattt---catggt-ttagaaagtaatgcattga-gtatgacattttgcactcttttgcagGTGGAGGATATGTGGTATCTCCTGTAAACCAGGGGAAACAATCAGTTGTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAAC
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---------gtaatgtatgctttactttcagtcaaatctctgtgggaacttaactatagtatttgcttacacttcactgatatgtgcctttttgaatattt----agGTGGAGGTTATGTAATATCACCAGTCAATCAAGGAAGACAATCAGTTGTAAAGCACATGCTTGCCATAGATTGGAAATTCTGGAAGTCTTATCTGTTTAC
upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 11
-------tttttctcagcaaaggactg-tgaatacccaatatttactggaggaatttcatggtttagaaagtaatgcattgagtatgacattttgcactcttttgcagGTGGAGGATATGTGGTATCTCCTGTAAACCAGGGGAAACAATCAGTTGTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAAC
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tttatcttctagtgctgttgaaagttgctagatagacagt--ttagtggaaaaaatt-atgggt--gagagtagt---tgaaggatgacaacttatattcttttgtagGTGGAGGGTATGTTATATCACCAGTGAACAAAGGAAAGCAATCAGTTGTAAAGCATATGCTTGCTATTGATTGGAAATGCTGGAGATCATATCTTAAATC
upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G40010.1 (Glycine max), 3'ss of exon 11
--------tttttctcagcaaaggactg-tgaatacccaatatttactggaggaatttcatggtttagaaagtaatgcattgagtatgacattttgcactcttttgcagGTGGAGGATATGTGGTATCTCCTGTAAACCAGGGGAAACAATCAGTTGTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAAC
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attaatcttctaatgctgttgaaagttgctagatagacagt--ttagtggaaaaatt--atgggt--gagagtagt---tgaaggatgacaactcatattcttttgtagGTGGAGGGTATGTTATATCACCAGTGAACAAAGGAAAGCAATCAGTTGTAAAGCATATGCTTGCTATTGATTGGAAATGCTGGAGATTATATCTTAAATC
upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT2G28320.1 (Arabidopsis thaliana), 3'ss of exon 11
-------tttttctcagcaaaggactgtgaatacccaatatttactggaggaatttcatggtttagaaagtaatgcattgagtatgacattttgcactcttttgcagGTGGAGGATATGTGGTATCTCCTGTAAACCAGGGGAAACAATCAGTTGTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAAC
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aagaatatatatatctgtggatgtaggccaatacatattgatcactaatgcaactat-tgatctcttctgtg------taactaatgttttctcctatgtatcacagGTGGCGGTTATGTGATTTCTCCCATAGACAACGGAAAACAATCAGTTGTGAAGCACATGCTTGCTGTTGATTGGAAGTCCTGGAGATCTTATGTGAAGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttcatggtttagaaagtaatgcattgagtatgacattttgcactcttttgcagGTGGAGGATATGTGGTATCTCCTGTAAACCAGGGGAAACAATCAGTTGTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAAC
ttttgcactctttt CT-rich tract
tttagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttctcagcaaaggactgtgaatacccaatatttactggaggaatttcatggtttagaaagtaatgcattgagtatgacattttgcactcttttgcagGTGGAGGATATGTGGTATCTCCTGTAAACCAGGGGAAACAATCAGTTGTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - tcagcaa
- - - - - - - - - - - - tacccaa
- - - - - - - - - - - - - - - - - ttactgg
- - - - - - - - - - - - - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca