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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctaatctcttccttgagtgttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGTTTCGGCTTTGTCGGAATCTGGGTGGCGCTGACCATCTATGTGACACTGA

Basic information

species Vitis vinifera
transcript Vv06s0004g02140.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30252403|gb|CB969954.1|CB969954
EST:     ATGGGGTCAACTTTGGTGCATCCGATTTTGCATATTCTGCATATTCCATG                         GTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
EST: gi|110698510|gb|EE076088.1|EE076088
EST:     ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATG                         GGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCCG-CCA
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagG-TTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTC-GTCCA
EST: gi|33405457|gb|CF211084.1|CF211084
EST:     ATGGGGTCAACTTTGGTGCATCCGATTTTGCATATTCTGCATATTCCATG                         GTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
EST: gi|46918193|gb|CN547522.1|CN547522
EST:     ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATG                         GTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT
genomic: ATGGGGTCAACTTTGGTGCATCTGATTTTGCATATTCTGCATATTCCATGgtaagtctaa ... tccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacacaaatctttcttcatgggctaatcgagattaatcttctttccacaaaagGTTCTGGTGGCCATAGTCAGCATCTTGTGCTTGTTCATTCTCTCGTCCAGTTTCGGCTTTGTCGGAATCTGGGTGGCGCTGACCATCTATGTGACACTGA
                                gattaat  putative branch site (score: 3)
                                  ttaatcttctttcc  CT-rich tract
                                 attaatctt  TA-rich tract