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...ttataatgagcatcattgtactgcaaatttgtgatggctgagagatatgttgtgttctttatggtaaaaagttttttttttttctcccaattattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTTTATATTACACCTGATATTCATTTTGATTGGAAGACTGGCAAAGGGAGCC
species | Vitis vinifera |
transcript | Vv06s0004g02030.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCACGGATTTEST: gi|161719982|gb|FC067724.1|FC067724
genomic: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
EST: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCACGGATTTEST: gi|161706729|gb|FC055894.1|FC055894
genomic: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
EST: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCACGGATTTEST: gi|110699874|gb|EE077267.1|EE077267
genomic: CACGGATGGAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
EST: GAGCCGATAGCTTC-AAACGTAATTTTAGCTCTTTCGCTGAG CTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
genomic: GAGCCGATAGCTTCAAAACGTAATTTTAGCTCTTTCGCTGAGgtagtgctca ... ttattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTT
tatgttgtgttctttatggtaaaaagttttttttttttctcccaattattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTTTATATTACACCTGATATTCATTTTGATTGGAAGACTGGCAAAGGGAGCC
ttttttttttttctcc CT-rich tract
ttctttatggtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataatgagcatcattgtactgcaaatttgtgatggctgagagatatgttgtgttctttatggtaaaaagttttttttttttctcccaattattttcagCTGGTTACTGCATGCTATTTGGAGCGAATAGACCTTTCGGCTCATGGATTTTATATTACACCTGATATTCATTTTGATTGGAAGACTGGCAAAGGGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - agcatca
- - - - - - - - - - ctgcaaa
- - - - - - - - - - - - - - - gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaa