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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatcctgggacaatctcctatgctgatccacattaaatcttccatatcagtatagatttctaataaaaagcaaatgaatttttatgcatatttataactcacaaatcctattgaatgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACCTTCTTGCTGGTTTAACTAGTGATGACTGGGACATCAAAACTGGTTCAGC

Basic information

species Vitis vinifera
transcript Vv06s0004g01770.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825269|gb|FQ417990.1|FQ417990
EST:     TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAG                         ATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
genomic: TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAGgtaacatcct ... tgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
EST: gi|27585741|gb|CB008436.1|CB008436
EST:     GGCTATTAAAG                         ATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
genomic: GGCTATTAAAGgtaacatcct ... tgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
EST: gi|351054198|gb|FQ450280.1|FQ450280
EST:     TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAG                         ATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
genomic: TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAGgtaacatcct ... tgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
EST: gi|110699440|gb|EE076439.1|EE076439
EST:     TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAG                         ATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
genomic: TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAGgtaacatcct ... tgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
EST: gi|351022487|gb|FQ447009.1|FQ447009
EST:     TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAG                         ATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
genomic: TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAGgtaacatcct ... tgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
EST: gi|110723755|gb|EE101433.1|EE101433
EST:     TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAG                         ATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC
genomic: TAAATTGACCCTTCAGCTGCCCATTAGACTAAGAACAGAGGCTATTAAAGgtaacatcct ... tgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatgaatttttatgcatatttataactcacaaatcctattgaatgaaattcagATGATCGACCTAAGTATGCTTCTATTCAGGCTATACTATACGGCCCGTACCTTCTTGCTGGTTTAACTAGTGATGACTGGGACATCAAAACTGGTTCAGC
                         aactcac  putative branch site (score: 2)
      aatttttatgcatatt  TA-rich tract