Sequence
atgc intronic sequence ATGC exonic sequence...tatttgacatctattgatcaaattcgatttatgattttcctcaacatgttaattactctgtgctacacctaactcaagtttctctccataaaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G45990.1 (Glycine max), 3'ss of exon 11
------tatttgacatctattgatcaaattcgatttatgattttcctcaacatgttaattactctgtgctacac---ctaactcaagtttctctccataaaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAG
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aaatgcaagttaac-tctttccttcaaggtagatttttgcatgtc---agtgaattcagtacaaattgataaacacgttgacttgaattcttttcaatgg-----ctagGTCCATTGGGAAGCCGTGCAGCAAAAGCAATTGGCTTCATTGACATGATGATTGACTATTCGTTTACCAATGCACCACTGCAGAAAGAACTACATGCTG
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA12G03060.1 (Glycine max), 3'ss of exon 12
--tatttgacatctattgatcaaattcgatttatgattttcctcaacatgttaattactctgtgctac--acctaactcaagtttctctccataaaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAG
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tctatgtgaagttaacaattttccttcaatgtctgctgttc----gcatgttagtaatttaattcttttgattaatgtgttgacacaatgtattttcaccctagGTCCACTGAGAAGTCGAGCTGCAAAAGCTATTGGATTTATTGATATGATGATTGATTACTCATCAGCCAATGCACCTCTACAGAAAGAAGTATTAGCAG
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA11G10770.2 (Glycine max), 3'ss of exon 11
tatttgacatctattgatcaaattcgatttatgattttcctcaacatgttaattactctgtgctac--acctaactcaagtttctctccataaaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAG
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tctttgtgaa--gttaacaattttccttcaatgtctgttgttcgcatgtttgtgatttaattcttttgattaatgtgttgacacaatgtattttcaccctagGTCCACTGAGAAGTCGGGCTGCAAAGGCTATTGGATTCATTGATATGATGATCGATTACTCATCAGCCAATGCACCTCTACAGAAAGAACTATCAGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690465|gb|EE067586.1|EE067586EST: CACAAAATCAGAGTCAATACGATATCTGCTG GCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGA
genomic: CACAAAATCAGAGTCAATACGATATCTGCTGgtacattgct ... aaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgttaattactctgtgctacacctaactcaagtttctctccataaaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAG
acctaac putative branch site (score: 2)
ataaaaatatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatttgacatctattgatcaaattcgatttatgattttcctcaacatgttaattactctgtgctacacctaactcaagtttctctccataaaaatatcagGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - atcaaat
- - - - - - - - - - - - - - - - - - - cctcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactcaa