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...tgctttagtttttttgcagaagtgaaaaccattttggaggaaacaaacataccatcctagggtgtttatatttaaacatatgtgatcaactatgtgacagCCAGACGATCAACCTTGTGTTGGTGAAGTGGGTTTGTTCCCTCTAATCATGGGAGCAACTGATCGGTTACTAAATGCTGACCATGAGGAGGTCTACTTCA
species | Vitis vinifera |
transcript | Vv06s0004g00740.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGCGATGACAACAGGCTTTGTCATTCTAGATGAAAATGGTGTTCCCTAT CCAGACGATCAACCTTGTGTTGGTGAAGTGGGTTTGTTCCCTCTAATCATGEST: gi|161713040|gb|FC062121.1|FC062121
genomic: CTGCGATGACAACAGGCTTTGTCATTCTAGATGAAAATGGTGTTCCCTATgtaagaccat ... tatgtgacagCCAGACGATCAACCTTGTGTTGGTGAAGTGGGTTTGTTCCCTCTAATCATG
EST: CTGCGATGACAACAGGCTTTGTCATTCTAGATGAAAATGGTGTTCCCTAT CCAGACGATCAACCTTGTGTTGGTGAAGTGGGTTTGTTCCCTCTAATCATG
genomic: CTGCGATGACAACAGGCTTTGTCATTCTAGATGAAAATGGTGTTCCCTATgtaagaccat ... tatgtgacagCCAGACGATCAACCTTGTGTTGGTGAAGTGGGTTTGTTCCCTCTAATCATG
aacataccatcctagggtgtttatatttaaacatatgtgatcaactatgtgacagCCAGACGATCAACCTTGTGTTGGTGAAGTGGGTTTGTTCCCTCTAATCATGGGAGCAACTGATCGGTTACTAAATGCTGACCATGAGGAGGTCTACTTCA
tttatatttaaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctttagtttttttgcagaagtgaaaaccattttggaggaaacaaacataccatcctagggtgtttatatttaaacatatgtgatcaactatgtgacagCCAGACGATCAACCTTGTGTTGGTGAAGTGGGTTTGTTCCCTCTAATCATGGGAGCAACTGATCGGTTACTAAATGCTGACCATGAGGAGGTCTACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - tgcagaa
- - - - - - - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtgtt