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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgagaacattgacaatagtttcttcttttctaagtaattgcaagtttgttttcactctggctctttcacattggataacttgtaatgaattttcaatttcagGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGG

Basic information

species Vitis vinifera
transcript Vv05s0077g01830.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os01g20860.1 (Oryza sativa), 3'ss of exon 8
-----------------------------gtgtgagaacattgacaatagtttcttct---tttctaagta--attgcaagtttgttttcactctggc-tctttcacattggataact---tgtaatgaatt-ttcaatttcagGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGG
                              | | |  |  |  |  ||||| | | ||   || |  |  |  |||     ||  |  | | |||     ||||    |||  || ||   || | |  | | |    ||| ||||||||||| |||||||||||||| || || |||||||||||  | ||||||   ||||||||||| ||||| |||||||| || || ||||| || |  
gtaatgttttgtgctctcatcatatttttatctcaagatttataggatagtgtttcctaatttaccgaacacgattaatgtttcctaatgattctaaaacctttttttttgcctatctaattgcattttactatcttgtttaagGGAATCTGAGCCAAATTCTTGGGAGGACACCATGAAAGATGAGCTTGATCGTACTAAATATCCTCGCATGCCCTGGCATGATGTTCAGTGTGCTCTTTAT

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os05g29050.2 (Oryza sativa), 3'ss of exon 11
gtgtgagaacattgacaatagtttcttcttttctaagtaattgcaagtttgttttcactctggctctttcacattggataacttgtaatgaattttcaatttcagGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGG
            | || || || | |  |||   | |  |||  | ||  | ||   | |    | ||     ||   | | || |  ||     |  |  | ||||||||||| |||||||| ||||| || ||||||||||||||  |||| ||    ||||||||||| ||||| |||||||| || || ||||| || |  
-----------gtaactatggtatttcgtttatgatggtatt-tatgtaggattattcccaaattattc----ttacctgagttttcctg----ctgtacataagGGAATCTGAGCCAAATTCCTGGGAGGACACAATGAAAGATGAGCTGGACCGAACGAAATATCCTCGCATGCCTTGGCATGATGTTCAGTGTGCTCTCTAC

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 9
gtgtgagaacattgacaatagtttcttcttttctaagtaattgcaagtttgttttcactctggctcttt---cacattggataacttgtaatgaattttcaatttcagGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGG
                                 ||  |  |||  |  || |   || || |     |    || | |   ||| |   | |  || |        |||||||||||||| ||||| ||||| || || |||||||||||  |||| ||||  |||||||| || ||||| |||||||| || || ||||| || |  
--------------------------------gtattttgttgttatcttctacccattcagatgtatggggcaaagtccctaaatgtcacttcatctctgtaaatagGGAATCTGAACCCAATTCCTGGGAGGACACCATGAAAGATGAGCTGGACCGTGATAAATATCCCCGCATGCCTTGGCATGATGTTCAGTGTGCTCTCTAT

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 10
--gtgtgagaacattgacaatagtttcttcttttctaagtaattgcaagtttgttttcactctggctctttcacattggataacttgtaatgaattttcaatttcagGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGG
   | |||     || |  |||  |  ||| ||  ||| | ||   |   | | | |   ||  | ||    | | |     | |  |  | |||||| |    ||| ||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||| || ||||||||||| |||
cactttgaatgtgttaa-gatatgtcattcattattaattgatcatagactagctctt--tcctgttcaacgatagtaatagattcattttcaattttga----cagAGAATCTGAACCAAATTCATGGGAAGATACAATGAAAGATGAATTAGAACGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGG

upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 10
--gtgtgagaacattgacaatagtttcttcttttctaagtaattgcaagtttgttttcactctggctctttcacattggataacttgtaatgaattttcaatttcagGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGG
  |       |   ||  || |  |  ||| |   ||| ||||   |      | ||  ||   |  | ||   | |  ||   |  |  | |||||| |    ||| ||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||| || ||||||||||| |||
ttgcactttgaatgtgttaagatgtcattcatcattaattaatcatagacagctctttcctgctgaacgttagtaatatat---tcattttcaattttga----cagAGAATCTGAACCTAATTCATGGGAAGATACAATGAAAGATGAATTAGAACGTGAAAAATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcactctggctctttcacattggataacttgtaatgaattttcaatttcagGGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGATCGTGGAAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGG
                         ggataac  putative branch site (score: 3)
                                          ttttc  putative PPT
                                   taatgaattttcaatt  TA-rich tract