Sequence
atgc intronic sequence ATGC exonic sequence...catatcctttacttataaaaaaatatatatatatatattggaaaagccagggtttcatgatctcatttttctcctaaaatatcttgcatttgttggacagTTATGTTTCAGAAACAGAGAGAAGGCATGCTATTCCATCACAAGCACAACGTCACATATTGGCAGGTCTTGCTTCTGCCGTGGGTGGTTTGAGTGCACCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g00820.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA07G36720.1 (Glycine max), 3'ss of exon 5
-----catatcctttacttataaaaaaat--atatatatatatattggaaaagccagggtttcatgatctcatttttctcctaaaatatcttgcatttgttggacagTTATGTTTCAGAAACAGAGAGAAGGCATGCTATTCCATCACAAGCACAACGTCACATATTGGCAGGTCTTGCTTCTGCCGTGGGTGGTTTGAGTGCACCG
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accacctcaaagtccactttcagttaccttgggtttcatcattatttatcacttttgttttgcaaaaattcacaccactcttaa------ttgt-cttgttccacagTTATGTTTCGGAAACACAAAGAAGACATGCTCTTCCATCTCAGGCACAACGGCATATATTGGCTGGTCTTGCCTCAGTTGTTGGTGGTTTAAGTGCACCA
upper sequence: Vv05s0077g00820.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA17G03880.1 (Glycine max), 3'ss of exon 5
catatcctttacttataaaaaaatatatatatatatattggaaaagccagggtttcatgatc-----tcatttttctcctaaaatatcttgcat------------ttgttggacagTTATGTTTCAGAAACAGAGAGAAGGCATGCTATTCCATCACAAGCACAACGTCACATATTGGCAGGTCTTGCTTCTGCCGTGGGTGGTTTGAGTGCACCG
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-----------------aaaccacttctaagtccactttcagttaccttgggtttcctcgttatttatcacttttgtcatgcaaaaattcacaccactcttaattgtctttttgcagTTACGTTTCGGAAACACAAAGAAGGCATGCTCTTCCATCTCAGGCACAGCGGCATATATTGGCTGGACTTGCCTCAGTTGTTGGTGGTTTAAGTGCGCCA
upper sequence: Vv05s0077g00820.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT4G16180.2 (Arabidopsis thaliana), 3'ss of exon 11
catatcctttacttataaaaaaatatatatatata-tattggaaaagccagggtttcatgatctcatttttctcctaaaatatcttgcatttgttggacagTTATGTTTCAGAAACAGAGAGAAGGCATGCTATTCCATCACAAGCACAACGTCACATATTGGCAGGTCTTGCTTCTGCCGTGGGTGGTTTGAGTGCACCG
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-gtgagcaaaacaca-acaacaatagaagtaaaaaacaatgagaaacctgctatcctgtcatcatatcgatttt----aatctcttgtatttg-----cagTTATGTTTCTGAAACAGAGAGACAGCATGCTGTCCCATCACAGGTACAGCGACATGTACTTGCAGGTATAGCTTCTGCTTTAGGCGGTGTAAGTGCACCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccagggtttcatgatctcatttttctcctaaaatatcttgcatttgttggacagTTATGTTTCAGAAACAGAGAGAAGGCATGCTATTCCATCACAAGCACAACGTCACATATTGGCAGGTCTTGCTTCTGCCGTGGGTGGTTTGAGTGCACCG
tcctaaa putative branch site (score: 2)
taaaatatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catatcctttacttataaaaaaatatatatatatatattggaaaagccagggtttcatgatctcatttttctcctaaaatatcttgcatttgttggacagTTATGTTTCAGAAACAGAGAGAAGGCATGCTATTCCATCACAAGCACAACGTCACATATTGGCAGGTCTTGCTTCTGCCGTGGGTGGTTTGAGTGCACCG
catatcc
- - - - - - - - aaaaaaa
- - - - - - - - - -aaaatat
- - - - - - - - - - - - - - - - - - - -ggaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - tttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcat