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...agtacgtgataaaattactctctgaacaaaaatcctttgcccctaccaattgtgttgatcatattactcataaaggctttcctggttttcctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTTGGAGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCAGTTGCCTTG
species | Vitis vinifera |
transcript | Vv05s0077g00690.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTGTACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|30299412|gb|CB976206.1|CB976206
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCCCGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|27583346|gb|CB006041.1|CB006041
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|33406611|gb|CF212238.1|CF212238
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|33407058|gb|CF212685.1|CF212685
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|110392261|gb|EC957554.1|EC957554
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTGTACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|110430378|gb|EC996932.1|EC996932
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTGTACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|30137246|gb|CB922584.1|CB922584
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|110392865|gb|EC957405.1|EC957405
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTGTACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|27585689|gb|CB008384.1|CB008384
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|27585107|gb|CB007802.1|CB007802
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|32246094|gb|CD711913.1|CD711913
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|30299334|gb|CB976128.1|CB976128
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCNGGGATAATGGAGCGCTEST: gi|110406864|gb|EC972451.1|EC972451
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTGTACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|33406531|gb|CF212158.1|CF212158
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTEST: gi|110732746|gb|EE108300.1|EE108300
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
EST: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTGTACGAGTGCAG CTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
genomic: GACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgtaaaattca ... ctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCT
ccaattgtgttgatcatattactcataaaggctttcctggttttcctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTTGGAGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCAGTTGCCTTG
tgttgat putative branch site (score: 4)
ctttcctggttttcct putative PPT
atattactcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtacgtgataaaattactctctgaacaaaaatcctttgcccctaccaattgtgttgatcatattactcataaaggctttcctggttttcctgtgattagCTGCCCAGAGTTGGAAGAGCTTGTAAAGATTTGCCGGGATAATGGAGCGCTTGGAGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCAGTTGCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - aaaatta
- - - - - - - - -ctctctg
- - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - -cctttgc
- - - - - - - - - - - - - - - - - - - - ccctacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaagg