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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatattgtcctgaaatgccttggccttttttaattattttaaagcttttgcttgttttttatgcaatttttttttcagCGTCTACATATGTTTGCGGAATCTCACACAACAATTTCGTTGCTACTCCTTGACCCTTTTTGC

Basic information

species Vitis vinifera
transcript Vv05s0077g00620.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715867|gb|EE094404.1|EE094404
EST:     AAGCTTACATACAATAAGTACCATCCATATACCTCATGGATTCCAATAAG                         CGTCTACATATGTTTGCGGAATCTCACACAACAATTTCGTTGCTACTCCTT
genomic: AAGCTTACATACAATAAGTACCATCCATATACCTCATGGATTCCAATAAGgtatgcatat ... tttttttcagCGTCTACATATGTTTGCGGAATCTCACACAACAATTTCGTTGCTACTCCTT
EST: gi|351025158|gb|FQ433575.1|FQ433575
EST:     AAGCTTACATACAATAAGTACCATCCATATACCTCATGGATTCCAATAAG                         CGTCTACATATGTTTGCGGAATCTCACACAACAATTTCGTTGCTACTCCTT
genomic: AAGCTTACATACAATAAGTACCATCCATATACCTCATGGATTCCAATAAGgtatgcatat ... tttttttcagCGTCTACATATGTTTGCGGAATCTCACACAACAATTTCGTTGCTACTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttttaattattttaaagcttttgcttgttttttatgcaatttttttttcagCGTCTACATATGTTTGCGGAATCTCACACAACAATTTCGTTGCTACTCCTTGACCCTTTTTGC
    ttttaat  putative branch site (score: 3)
                                           tttttttttc  putative PPT
     tttaattattttaaag  TA-rich tract