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...tgctacttatgttgtgattataggaataaaactcttggattttttatttatttttttatttctattttatttcaactttcaaaatatttttatcatgcagGTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAGGATGAGGTTAATGTAGCTTGCTTTCATCCTTCTGTTGGAGGTGGCCTTG
species | Vitis vinifera |
transcript | Vv05s0077g00140.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAG GTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAGEST: gi|30129161|gb|CB914500.1|CB914500
genomic: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAGgtaagttttt ... tatcatgcagGTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAG
EST: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAG GTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAGEST: gi|30125879|gb|CB911218.1|CB911218
genomic: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAGgtaagttttt ... tatcatgcagGTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAG
EST: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAG GTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAGEST: gi|32457197|gb|CD798371.1|CD798371
genomic: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAGgtaagttttt ... tatcatgcagGTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAG
EST: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAG GTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAG
genomic: GTATTGTCATTGATGGGGAGACAACAGTGCCTATTTACACAATTCTGGAGgtaagttttt ... tatcatgcagGTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAG
atttatttttttatttctattttatttcaactttcaaaatatttttatcatgcagGTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAGGATGAGGTTAATGTAGCTTGCTTTCATCCTTCTGTTGGAGGTGGCCTTG
tttttatc CT-rich tract
tttttttatttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctacttatgttgtgattataggaataaaactcttggattttttatttatttttttatttctattttatttcaactttcaaaatatttttatcatgcagGTCTACAGAGTTTCTGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAGGATGAGGTTAATGTAGCTTGCTTTCATCCTTCTGTTGGAGGTGGCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
tgctact
- - - - -tgttgtg
- - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - -ctcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaata