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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctgcaatgcttcattttatacattaccattaggtgaaagattttcaaggtgatcgcattcaattttgttcattgcttctgcagCCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAACAGTTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAG

Basic information

species Vitis vinifera
transcript Vv05s0051g00930.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA05G28150.1 (Glycine max), 3'ss of exon 11
-gtatcct-gcaatgcttcattttatacattaccattaggtgaaagattttcaagg--tgatcgcattcaattttgttcattgcttctgcagCCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAACAGTTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAG
  ||| |  ||| |   |  ||| ||  ||| |  |||   |  |  | ||  |||  |||     |||| |||  || |   | ||||||| ||||||||| ||  || |||||| |||| |||||||||||||| || || || |||||||||||||||||||||||||||||||| |||
gttattcaagcagtatattctttcatttatttctgttattaggtatttatttgaggattgacaatgttcactttgattgaaaacctctgcagTCAAGAGAATATGCTGATATATCATTAAAGGACATAGATCAAGTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGATAAG

upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA08G11130.1 (Glycine max), 3'ss of exon 11
gta--tcctgcaatgcttcattttatacattaccattaggtgaaagattttcaagg--tgatcgcattcaattttgttcattgcttctgcagCCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAACAGTTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAG
|||  ||   || |   |  ||  ||  ||| |  |||   |  |  | ||  |||  |||      ||| ||   || |   | ||||||| ||| ||||| ||  || |||||| |||| ||||| |||||||| || || || |||||||||||||||||||||||||||||||| |||
gtaattcaaacagtatattcttccatttatttctgttattaggtatttatttgaggattgacaatggtcacttcgattgaaaacctctgcagTCAAAAGAATATGCTGATATATCATTAAAGGACATTGATCAAGTTGCCAAGAGCTCATTTCCTTTGTGCATGCGTCACCTATTTGATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190043|gb|CF609392.1|CF609392
EST:     ATTGTAGAAGCCCTATCTACAAGCTATTTGGGTCCAGACTATTCTCAG                         CCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAAC
genomic: ATTGTAGAAGCCTTATCTACAAGCTATTTGGGTCCAGACTATTCTCAGgtatcctgca ... gcttctgcagCCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggtgaaagattttcaaggtgatcgcattcaattttgttcattgcttctgcagCCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAACAGTTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAG
                                           ttgcttct  CT-rich tract
                            attcaatttt  TA-rich tract