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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgattgtggctatcatgtgctagtatatgaatctacaattccttgactttgttttattcatttattatttattagaattggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgtagGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG

Basic information

species Vitis vinifera
transcript Vv05s0020g04650.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 3'ss of exon 10
gtaaatgattgtggctatcatgtgctagtatatgaatctacaattccttgactttgttttattcatttattatttattagaattggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgtagGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG
                         | |   |||| |  | | ||   | | | |   |  | || |     ||  | ||  |   || |   |   |  ||||| |         |  |||||| ||     |  ||||||||||||||||| ||| |||||| ||||| |||||||||| |||| |||||| | || |||||||||||||| ||||||
-------------------------tgggtgatgattgcatagtt---taattgtacatgttacactagaggttcttcagc-tgctttcttgtcaagtttcaaataaaaacc----tacaattttaat-----tccagGTATGTGGAGGTAAATATGAATTCTGGTGCTACTGTTTGGCCACTATTCAACAGTCTCCAGGCATTCTGGCCAGGACTTCAG

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 10
gtaaatgattgtggctatcat-gtgctagtatatgaatctacaattccttgactttgttttattcatttattatttattagaattggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgtagGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG------------------
                  | | |  | |  |  || | |||||      ||| | |||||  ||   |   |  | ||  |     |||| || || |    |||| |            || ||  ||        ||||| |||||||| || ||| | |||| ||||| |||||||||| | || || ||| |||| |||||||||||||| ||||||                  
-----------------ccgtagcacaaaaaggtgtacctacatgcaagtgattatgtttgtttagctctgtggtcat-ggcccctgtttaaaaccaa----aaatga------------aaattccat-----cacagGTACGTGGAGGTTAATATGAACTCTGGTGCTACTGTTTGGCCACTCTTCAATAGTCTGCAGGCATTCTGGCCAGGGCTTCAGGTTTGGTTACACATATTT

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GRMZM2G173868_T04 (Zea mays), 3'ss of exon 10
gtaaatgattgtggctatcat-gtgctagtatatgaatctacaattccttgactttgttttattcatttattatttattagaattggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgtagGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG
                  | | |  | |  |  || | |||||      ||| | |||||  ||   |   |  | ||      ||  |||||    | || |||| |            || ||  ||        ||||| |||||||| || ||| | |||| ||||| |||||||||| | || || ||| |||| |||||||||||||| ||||||
-----------------ccgtagcacaaaaaggtgtacctacatgcaagtgattatgtttgtttagctctgtggtcatggcccctg--tttaa---aaccaaaaatga------------aaattccat-----cacagGTACGTGGAGGTTAATATGAACTCTGGTGCTACTGTTTGGCCACTCTTCAATAGTCTGCAGGCATTCTGGCCAGGGCTTCAG

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G32320.1 (Glycine max), 3'ss of exon 9
gtaaatgattgtggctatcatgtgctagtatatgaatctacaattccttgactttgttttattcatttattatttattagaattggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgt--agGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG
||||| | ||||||||||  ||      | ||   ||     | ||  || || |  ||| || |  | |   | | ||   ||  ||||||    ||  ||| || |         || |||| | | ||| | |  ||||||||||| || || |||||||||||||||||||| |||||||||||||||||  |||| ||||| ||||| |||||||||
gtaaaagcttgtggctatgttgccaccctgtaaatatacttgactcgctgtctatcgttttttgaaatgtg--taagtatgtttatttttaaatgtatttcaagtttga---aactcttgatttgtgtttatgtttcaagGTATGTGGAAGTGAATATGGATTCTGCTGCTATTGTCTGGCCATTATTTAACAGCCTGCAGGCATTTTGGCCTGGCCTTCAG

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA20G35290.1 (Glycine max), 3'ss of exon 5
gtaaatgattgtggctatcatgtgctagtatatgaatctacaattccttgactttgttttattcatttattatttattagaattggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgtagGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG
                                                                                                                                                    || || |||||||||||||||||||| ||||||| |||||||||  |||| ||||| ||||| |||||||||
----------------------------------------------------------------------------------------------------------------------------------------------------gtgaatatggattctgctgctattgtctggccatgatttaacagCCTGCAGGCATTTTGGCCTGGCCTTCAG

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaaatgattgtggctatcatgtgctagtatatgaatctacaattccttgactttgttttattcatttattatttattagaattggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgtagGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG
                                                    |  | ||| |  || |  |||     ||||        || |   ||     || ||        ||  || |  | |    |||||||||| || || || |||||||| || |||||||| |||||| ||||||||||  | ||||| ||||||||||| ||||||
---------------------------------------------------gtaagctttctgtatcttgtatgatagagaaacaagaacaaacaattcctttgtttggacttactgttttttctagttttgtcgtagGTATGTAGAAGTCAATATGGATTCCGCAGCTATTGTCTGGCCAGTATTTAACAGCCTTCAAGCTTTCTGGCCAGGACTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttaacccgatcacaaattaggttgggggtttaatttttatgtatctgtagGTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAG
                                 tttaatttttatgtat  TA-rich tract