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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatctttatggataccttttggactgaaaataacacaaggttaagcatgcactaaatttgagttgaatgttcttttttcaattgatgcagGTTACAAACTCCCAAACCGCTGAGCTTTTAAAGTCAATTTCAGGATTGAAAGTTGAGCCAGTAGAAAATGTTGCATCCAAACTACTGGTTCAATGCTCTC

Basic information

species Vitis vinifera
transcript Vv05s0020g04630.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 11
gtataatctttatggataccttttggactgaaaataacacaaggttaagcatgcactaaatttgagttgaatgttcttttttcaattgatgcagGTTACAAACTCCCAAACCGCTGAGCTTTTAAAGTCAATTTCAGGATTGAAAGTTGAGCCAGTAGAAAATGTTGCATCCAAACTACTGGTTCAATGCTCTC
|| |  |  |||||   | ||||  |  | |  | ||   ||  | ||      |  ||| || | |||||  ||  ||  | ||| |||  ||||| |||  ||| | ||   |||| | || |||||||| |||| ||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||
gtttgttacttatgagcagctttgtgtgtaactaaaaataaaaatcaaaagcagag-aaactttatttgaaattttattaattaatggatatagGTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCAGCATTGAAAGTAGAGCCAGTAGAAAATGTGGCATCCAAACTATTTGTTCAATGCTCTC

upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA20G35310.1 (Glycine max), 3'ss of exon 11
---------gtataatctttatgga--taccttttggactgaaaataacacaaggttaagcatgcactaaatttgagttgaatgttcttttttcaattgatgcagGTTACAAACTCCCAAACCGCTGAGCTTTTAAAGTCAATTTCAGGATTGAAAGTTGAGCCAGTAGAAAATGTTGCATCCAAACTACTGGTTCAATGCTCTC
          ||| |  | |  | |  |   |||   ||| ||| ||| |  |    |||||   | |||| || | |||||  ||  ||  | |||  ||  ||||| |||  ||| | ||   |||| | || |||||||| |||| ||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||
gtttgttacttatgacttatgagcagctttgtttaaaactaaaactaaaaataaa--aagcagagaataaactttatttgaaattttattaattaatgaatatagGTTTCAAGTTCCAAGACATGTGAGTTGTTGAAGTCAATCTCAGCATTGAAAGTAGAGCCAGTAGAAAATGTTGCATCGAAACTATTTGTTCAATGCTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggttaagcatgcactaaatttgagttgaatgttcttttttcaattgatgcagGTTACAAACTCCCAAACCGCTGAGCTTTTAAAGTCAATTTCAGGATTGAAAGTTGAGCCAGTAGAAAATGTTGCATCCAAACTACTGGTTCAATGCTCTC
                                  ttcttttttcaatt  CT-rich tract
                                  ttcttttttcaatt  TA-rich tract