1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttaagaatcaacttttcataggattcctgacactaccaggtttcaattcctcacactatcaggttttgaaactcctctgaaagccaaaagttatttgcagGTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCACATAATTGGGCAGAAATGCAGCCACTGCAAATCATACAACACTCGCATAG
species | Vitis vinifera |
transcript | Vv05s0020g01800.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG GTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCACEST: gi|110410373|gb|EC976054.1|EC976054
genomic: ATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAGgttcattctt ... ttatttgcagGTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCAC
EST: AGAGATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG GTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCACEST: gi|110418951|gb|EC985135.1|EC985135
genomic: AGAGATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAGgttcattctt ... ttatttgcagGTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCAC
EST: CTGAGGATTACCAACACAAGAAG GTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCACEST: gi|30135882|gb|CB921220.1|CB921220
genomic: CTGAGGATTACCAACACAAGAAGgttcattctt ... ttatttgcagGTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCAC
EST: ATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAG GTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCAC
genomic: ATTGAAGCAACTATCATGCCTGAGGATTACCAACACAAGAAGgttcattctt ... ttatttgcagGTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCAC
attcctcacactatcaggttttgaaactcctctgaaagccaaaagttatttgcagGTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCACATAATTGGGCAGAAATGCAGCCACTGCAAATCATACAACACTCGCATAG
tcctcac putative branch site (score: 2)
aaaagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagaatcaacttttcataggattcctgacactaccaggtttcaattcctcacactatcaggttttgaaactcctctgaaagccaaaagttatttgcagGTTTGGATCCTCTGCAATGACTGCAACGACACTACTGAAGTTTTCTACCACATAATTGGGCAGAAATGCAGCCACTGCAAATCATACAACACTCGCATAG
- - gaatcaa
- - - - - - - - - - - -ttcctga
- - - - - - - - - - - - - - - cactacc
- - - - - - - - - - - - - - - - - - - - - - - - cctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagccaa