Sequence
atgc intronic sequence ATGC exonic sequence...ataaattaataatttcttgttctagtaaatgctgaacactcctttgtttgcaaatggaatgctactgtgtttgtttctaattgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g00560.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G38860.1 (Glycine max), 3'ss of exon 4
ataaattaataatttcttgttctagtaaatgctgaacactcctttgtttgcaaatggaa-tgctactgtgtttgtttc--taattgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG
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-aatcataacaactacttgtg--aatggcatatagatatgtatttctctatggtaacaacttctgctgtgaaaacaccaatcattacttatctccaatttcagGTTGTGAATGATATTTGCATCTTATCATCTAGTGGAAGAGTGGCTTCTTGTGATGGAACAATTCACATTTGGAATAGTCAAACAGGGAAACAAATATTAG
upper sequence: Vv05s0020g00560.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA20G28920.1 (Glycine max), 3'ss of exon 5
--ataaattaataatttcttgttctagtaaatgctgaacactcctttgtttgcaaatggaatgctactgtgtttgtttc--taattgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG
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gccgatcttaacaactacttgtg--aatggcctttagatatgtatttctctatggt--aactacttctgtgaatacaccagtcattacttatctccaatttcagGTTGTGAATGATATTTACATCTTATCATCTAGTGGAAGAGTGGCTTCTTGTGATGGAACAATTCACATTTGGAATAGTCAAACAGGGAAGCAGATATTAG
upper sequence: Vv05s0020g00560.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT5G18525.1 (Arabidopsis thaliana), 3'ss of exon 11
---------ataaattaataatttcttgttctagtaaatgctgaacactcctttgtttgcaaatggaatgctactgtgtttgtttctaattgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG
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gttggttccttgtattattatagctttcttacggcggcaaacacataattattctcttacccataaaataggaa---gtatgcacctaattatttcttgtatattttagGTTGTTAATGACATCGGTATTCTGTCATCCACCGGAAAGGTAGCATCTTGCGACGGAACTATACATGTGTGGAATAGCCAAACCGGGAAACTAATATCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttgcaaatggaatgctactgtgtttgtttctaattgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG
ttctaat putative branch site (score: 2)
tttctaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataaattaataatttcttgttctagtaaatgctgaacactcctttgtttgcaaatggaatgctactgtgtttgtttctaattgcttgctgcaacgttcagGTTGTGAATGATATTTGCATCTTGTCATCAAGCGGAAGGGTAGCTTCTTGTGATGGAACAATACATATTTGGAATAGCCAAACAGGAAAGCTAATAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- aaattaa
- - - - - - - - - - - - - -aatgctg
- - - - - - - - - - - - - - - - - - - - - - - - -gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgct