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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcaattctttcgctctgaattagagtccttatgcacttttggtttctcttccttcatcatattttcacgttaaaatctgggaaaagaaaagaacttacacccagtggcttatttcagtttataaattttctgtacttgctgtgttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTAGATGGGATCATTACTAGAGGCAGGGGAGAGATTAGACGTACATGTAGTT

Basic information

species Vitis vinifera
transcript Vv05s0020g00440.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA09G03600.1 (Glycine max), 3'ss of exon 14
gtaagttttcaattctttcgctctgaattagagtccttatgcacttttggtttctcttccttcatcatattttcacgttaaaatctgggaaaagaaaagaacttacacccagtgg-cttatttcagtttataaattttctgtacttgctgtgt-tcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTAGATGGGATCATTACTAGAGGCAGGGGAGAGATTAGACGTACATGTAGTT
                                                                  | |||||    ||| ||| ||| |    |     | ||  |     ||  || ||  |  |||  |   ||| |  | |||   | | | |   |||||  ||||  |||| |||| |  ||| ||||||||  ||||||||||||||||||| || |||||| || || |||| ||| ||||||||   || ||| 
-----------------------------------------------------------tgaagcaacattttt---ttataat-tggcattcaatgtccatttggatggtttgaactgataaccatttggatggtttttacaattggcatctgtgtcttcagGAAGGGGACTTGAGCAGGACAGCTTCCTTTGCAGATGATGGAGAGGTTTTAGATGGAATAATTACTCGAAGCCGGGGTGAGGTTAGACGTGTTTGCAGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692037|gb|EE070827.1|EE070827
EST:     ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGT                         GAGAGGGAGCTGAGTAGGAGAAGTTCATTTGTAGACCATGGAGAGGTTTTA
genomic: ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGTgtaagttttc ... ttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
EST: gi|110362963|gb|EC926527.1|EC926527
EST:     ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGT                         GAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
genomic: ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGTgtaagttttc ... ttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
EST: gi|22014079|gb|BQ799113.1|BQ799113
EST:     ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGT                         GAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
genomic: ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGTgtaagttttc ... ttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
EST: gi|110717152|gb|EE092758.1|EE092758
EST:     ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGT                         GAGAGGGAGCTGAGTAGGAGAAGTTCATTTGTAGACCATGGAGAGGTTTTA
genomic: ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGTgtaagttttc ... ttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
EST: gi|110726434|gb|EE102210.1|EE102210
EST:     ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGT                         GAGAGGGAGCTGAGTAGGAGAAGTTCATTTGTAGACCATGGAGAGGTTTTA
genomic: ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGTgtaagttttc ... ttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
EST: gi|110422205|gb|EC988520.1|EC988520
EST:     ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGT                         GAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
genomic: ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGTgtaagttttc ... ttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
EST: gi|110424761|gb|EC991132.1|EC991132
EST:     ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGT                         GAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA
genomic: ATGCCGCAGAATATGAAGAGGTTCCTGCTTTATCATTCAACCTCACGAGTgtaagttttc ... ttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccagtggcttatttcagtttataaattttctgtacttgctgtgttcttagcagGAGAGGGAGCTGAGTAGGAGAAGTTCATTTGCAGACCATGGAGAGGTTTTAGATGGGATCATTACTAGAGGCAGGGGAGAGATTAGACGTACATGTAGTT
                                           tgttctt  CT-rich tract
          ttatttcagtttataa  TA-rich tract